This is the main branch
X
Pathoplexus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
HMPV
Measles Virus
Mpox Virus
RSV-A
RSV-B
West Nile Virus
Browse
Submit
SeqSets
News
About
Docs
Login
Pathoplexus
Browse
Submit
SeqSets
News
About
Docs
Login
API docs
Governance
Funding
Contact
Status
PPD_001RRS6.1
Download
Download FASTA
Download metadata TSV
Display Name: Pakistan/PPD_001RRS6.1/2024-07-12
M. Umair,
R. Hakim,
Z. Jamal &
M. Salman
Sample details
Collection date
2024-07-12
Country
Pakistan
Admin level 1
Punjab
Isolate name
CCHF/NIHPAK-37/2024
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-17 10:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
National Institute of Health, Department of Virology
INSDC
INSDC accession L
PQ523728.1
INSDC accession S
PQ523721.1
NCBI release date
2024-11-12
Host
Host taxon ID
9606
Host name - scientific
Homo sapiens
Alignment and QC metrics L
Length L
12140
# of SNPs L
1613
# of inserted bases L
54
# of deleted bases L
7
# of ambiguous bases L
0
# of unknown bases L
0
# of frame shifts L
0
Completeness L
99.88%
Alignment and QC metrics S
Length S
1655
# of SNPs S
209
# of inserted bases S
2
# of deleted bases S
1
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
Completeness S
98.92%
Submission details
Submission ID
PQ523728.1.L/PQ523721.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-17 10:51:39 UTC
Date released
2025-09-17 11:09:14 UTC
Earliest release date
2024-11-12
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
G
23
T
L:
A
35
G
L:
G
43
T
L:
T
49
C
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
66
C
L:
T
68
C
L:
G
69
A
L:
G
71
C
L:
C
85
T
L:
G
88
A
L:
G
93
A
L:
A
109
G
L:
C
117
A
L:
A
124
G
L:
T
131
A
Show more
S
S:
T
48
C
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
G
99
A
S:
A
118
G
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
G
169
A
S:
C
178
A
S:
T
182
C
S:
C
217
T
S:
G
229
A
S:
C
235
T
S:
T
250
A
S:
G
262
A
Show more
Deletions
L:11920-11924, L:11981, L:11982, S:1617
Insertions
ins_L:58:T, ins_L:11917:CATTATC, ins_L:11973:A, ins_L:11977:A, ins_L:12053:CTAC, ins_L:12078:TTACT, ins_L:12083:ACTATTC, ins_L:12098:TCATGTCCGTTTTATT, ins_L:12108:TGTGGGGGGAAC, ins_S:1581:C, ins_S:1612:C
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
K
275
R
Show more
Deletions
None
Insertions
None
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue