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PPD_001RT6B.1

Display Name: Tajikistan/PPD_001RT6B.1/2023-05-26
J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

Sample details

Collection date
2023-05-26
Country
Tajikistan
Isolate name
CCHFV_4_159

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:51insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
UK Health Security Agency, Research & Evaluation

INSDC

INSDC accession S
NCBI release date
2025-04-05

Host

Host taxon ID
Host name - scientific
Hyalomma anatolicum

Alignment and QC metrics S

Length S
919
# of SNPs S
110
# of inserted bases S
0
# of deleted bases S
0
# of ambiguous bases S
5
# of unknown bases S
0
# of frame shifts S
0
Completeness S
54.67%

Submission details

Submission ID
PV390609.1.S
Submitting group
Date submitted
2025-09-17 10:51:39 UTC
Date released
2025-09-17 11:09:14 UTC
Earliest release date
2025-04-05

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G429A
  • S:A439G
  • S:C445T
  • S:T446C
  • S:A460G
  • S:C478T
  • S:C484A
  • S:C487T
  • S:A490G
  • S:T496C
  • S:C497T
  • S:G499A
  • S:A503C
  • S:C514T
  • S:G538A
  • S:G544A
  • S:G559A
  • S:C563T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
    • Deletions
    None
    Insertions
    None

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