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PPD_001RTJL.1

Display Name: Kazakhstan/PPD_001RTJL.1/2024
B. M. A. Maxat, M. G. K. Gulzhan, M. K. T. Kydyrbay, S. S. K. Serik, K. B. A. Balzhan & N. B. R. Botagoz

Sample details

Collection date
2024
Country
Kazakhstan
Admin level 1
Turkestan, Arys
Isolate name
KAZ/154/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:51insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Kazakh Scientific Research Veterinary Institute

INSDC

INSDC accession L
INSDC accession S
NCBI release date
2025-05-21

Host

Host taxon ID
Host name - scientific
Ixodoidea

Alignment and QC metrics L

Length L
528
# of SNPs L
88
# of inserted bases L
0
# of deleted bases L
0
# of ambiguous bases L
0
# of unknown bases L
0
# of frame shifts L
0
Completeness L
4.36%

Alignment and QC metrics S

Length S
484
# of SNPs S
72
# of inserted bases S
0
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
Completeness S
28.95%

Submission details

Submission ID
PV646618.1.L/PV646617.1.S
Submitting group
Date submitted
2025-09-17 10:51:39 UTC
Date released
2025-09-17 11:10:15 UTC
Earliest release date
2025-05-21

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:A526G
  • L:C529T
  • L:T535C
  • L:G538T
  • L:C541T
  • L:T550G
  • L:G553A
  • L:A563G
  • L:A565T
  • L:A571G
  • L:G578A
  • L:G583A
  • L:C586T
  • L:G589A
  • L:A590G
  • L:C595T
  • L:G597A
  • L:T601C

    • S

  • S:T157C
  • S:C166T
  • S:G171A
  • S:C178A
  • S:A180G
  • S:T182C
  • S:G190A
  • S:G196A
  • S:C217T
  • S:G229A
  • S:C235T
  • S:T250A
  • S:G256A
  • S:A268C
  • S:G271A
  • S:T277C
  • S:T283C
  • S:T289C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:S39N
  • NP:N42S
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H

    • RdRp

  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:T215A
  • RdRp:K275R
  • RdRp:I279V
    • Deletions
    None
    Insertions
    None

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