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Status
PPD_001RTNC.1
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Download FASTA
Download metadata TSV
Display Name: Tajikistan/PPD_001RTNC.1/2023-05-07
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
Sample details
Collection date
2023-05-07
Country
Tajikistan
Isolate name
CCHFV_24_24
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-17 10:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
INSDC
INSDC accession L
PV738567.1
INSDC accession S
PV738566.1
NCBI release date
2025-06-15
Host
Host taxon ID
176092
Host name - scientific
Hyalomma anatolicum
Alignment and QC metrics L
Length L
11435
# of SNPs L
998
# of inserted bases L
0
# of deleted bases L
0
# of ambiguous bases L
21
# of unknown bases L
3640
# of frame shifts L
0
Completeness L
64.21%
Alignment and QC metrics S
Length S
926
# of SNPs S
110
# of inserted bases S
0
# of deleted bases S
4
# of ambiguous bases S
5
# of unknown bases S
0
# of frame shifts S
1
Frame shifts S
NP:435-483(nt:1356-1504)
Completeness S
55.32%
Submission details
Submission ID
PV738567.1.L/PV738566.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-17 10:51:39 UTC
Date released
2025-09-17 11:10:15 UTC
Earliest release date
2025-06-15
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
466
C
L:
G
472
A
L:
C
475
T
L:
G
490
A
L:
T
493
C
L:
G
502
A
L:
T
508
A
L:
A
526
G
L:
T
535
C
L:
G
538
T
L:
C
541
T
L:
T
550
G
L:
G
553
A
L:
A
563
G
L:
A
565
T
L:
A
571
G
L:
G
578
A
L:
G
583
A
Show more
S
S:
G
429
A
S:
A
439
G
S:
C
445
T
S:
T
446
C
S:
G
448
C
S:
A
460
G
S:
C
484
A
S:
C
487
T
S:
A
490
G
S:
T
496
C
S:
C
497
T
S:
G
499
A
S:
A
503
C
S:
A
520
G
S:
G
538
A
S:
G
544
A
S:
G
559
A
S:
C
571
T
Show more
Deletions
S:1352-1355
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
G
259
E
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
N
419
S
RdRp
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
T
200
A
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
V
407
A
RdRp:
T
481
A
RdRp:
K
486
R
RdRp:
S
498
G
RdRp:
I
505
T
RdRp:
A
508
I
RdRp:
V
515
I
RdRp:
K
940
R
Show more
Deletions
NP:433, NP:434
Insertions
None
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