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PPD_001RTS4.1

Display Name: Tajikistan/PPD_001RTS4.1/2023-05-23
J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

Sample details

Collection date
2023-05-23
Country
Tajikistan
Isolate name
CCHFV_24_179

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:51insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
UK Health Security Agency, Research & Evaluation

INSDC

INSDC accession S
NCBI release date
2025-06-15

Host

Host taxon ID
Host name - scientific
Hyalomma anatolicum

Alignment and QC metrics S

Length S
503
# of SNPs S
61
# of inserted bases S
0
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
11
# of frame shifts S
0
Completeness S
29.43%

Submission details

Submission ID
PV738575.1.S
Submitting group
Date submitted
2025-09-17 10:51:39 UTC
Date released
2025-09-17 11:10:15 UTC
Earliest release date
2025-06-15

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:A856G
  • S:T862C
  • S:G864A
  • S:C871T
  • S:G879A
  • S:G901A
  • S:T904C
  • S:T907C
  • S:C925T
  • S:T928C
  • S:T934C
  • S:A937G
  • S:A955G
  • S:A956G
  • S:C958T
  • S:T991C
  • S:T997C
  • S:T1006C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:K354R
    • Deletions
    None
    Insertions
    None

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