This is the main branch

PPD_001RTU0.1

Display Name: Tunisia/PPD_001RTU0.1/2024
S. Fabi, G. Di Pietra, E. Valente, M. Bellato, C. Agostini, M. Paccagnella, E. Franchin, V. Chisu, C. Foxi, C. Del Vecchio, I. Castagliuolo, G. Masala & C. Salata

Sample details

Collection date
2024
Country
Tunisia
Isolate name
CCHFV/TUN/KOS/2024/22A

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:51insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Padova, Molecular Medicine

INSDC

INSDC accession S
NCBI release date
2025-07-23

Host

Host taxon ID
Host name - scientific
Hyalomma sp.

Alignment and QC metrics S

Length S
741
# of SNPs S
133
# of inserted bases S
0
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
Completeness S
44.32%

Submission details

Submission ID
PV920625.1.S
Submitting group
Date submitted
2025-09-17 10:51:39 UTC
Date released
2025-09-17 11:10:15 UTC
Earliest release date
2025-07-23

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:T745A
  • S:C750T
  • S:A751T
  • S:C757T
  • S:G761A
  • S:T763C
  • S:G766A
  • S:G775A
  • S:T778A
  • S:A781G
  • S:A784G
  • S:A791G
  • S:A793T
  • S:T796C
  • S:T799G
  • S:A802G
  • S:A808G
  • S:T814G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:A232V
  • NP:A236T
  • NP:I246V
  • NP:D248E
  • NP:A256T
  • NP:N258K
  • NP:G259E
  • NP:R270K
  • NP:I277V
  • NP:A285T
  • NP:S301G
  • NP:A307P
  • NP:Y311F
  • NP:T341I
  • NP:T420S
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue