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PPD_001RTXU.1

Display Name: Tunisia/PPD_001RTXU.1/2024
S. Fabi, G. Di Pietra, E. Valente, M. Bellato, C. Agostini, M. Paccagnella, E. Franchin, V. Chisu, C. Foxi, C. Del Vecchio, I. Castagliuolo, G. Masala & C. Salata

Sample details

Collection date
2024
Country
Tunisia
Isolate name
CCHFV/TUN/REM/2024/60A

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:51insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Padova, Molecular Medicine

INSDC

INSDC accession S
NCBI release date
2025-07-23

Host

Host taxon ID
Host name - scientific
Hyalomma sp.

Alignment and QC metrics S

Length S
665
# of SNPs S
124
# of inserted bases S
0
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
Completeness S
39.77%

Submission details

Submission ID
PV920628.1.S
Submitting group
Date submitted
2025-09-17 10:51:39 UTC
Date released
2025-09-17 11:10:15 UTC
Earliest release date
2025-07-23

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:T799G
  • S:A802G
  • S:A808G
  • S:T814G
  • S:G820A
  • S:C829G
  • S:G831A
  • S:T835C
  • S:G838C
  • S:G844A
  • S:T847C
  • S:G850A
  • S:C853T
  • S:A856G
  • S:T859A
  • S:T862C
  • S:G864A
  • S:A865G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:D248E
  • NP:N258K
  • NP:G259E
  • NP:R270K
  • NP:I277V
  • NP:A285T
  • NP:S301G
  • NP:A307P
  • NP:Y311F
  • NP:T420S
  • NP:N442H
  • NP:V449G
  • NP:A450G
  • NP:L454P
  • NP:L455V
  • NP:H456D
  • NP:V460G
    • Deletions
    None
    Insertions
    None

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