This is the main branch

PPD_001RU5C.1

Display Name: France/PPD_001RU5C.1/2024
M. Gasparine & A. Falchi

Sample details

Collection date
2024
Country
France
Isolate name
2456

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:51insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Corsica, Unite des Virus Emergents

INSDC

INSDC accession M
INSDC accession S
NCBI release date
2025-08-10

Host

Host taxon ID
Host name - scientific
Ixodoidea

Alignment and QC metrics M

Length M
5366
# of SNPs M
169
# of inserted bases M
0
# of deleted bases M
0
# of ambiguous bases M
0
# of unknown bases M
0
# of frame shifts M
0
Completeness M
100.00%

Alignment and QC metrics S

Length S
1673
# of SNPs S
128
# of inserted bases S
1
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
Completeness S
100.00%

Submission details

Submission ID
PV976877.1.M/PV976894.1.S
Submitting group
Date submitted
2025-09-17 10:51:39 UTC
Date released
2025-09-17 11:10:15 UTC
Earliest release date
2025-08-10

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:C82T
  • M:G124A
  • M:T137C
  • M:G175T
  • M:G207A
  • M:C217T
  • M:C229A
  • M:T259C
  • M:C320T
  • M:C356T
  • M:T360C
  • M:A364G
  • M:A377G
  • M:T385C
  • M:C404T
  • M:T406C
  • M:C410T
  • M:G414A

    • S

  • S:G20T
  • S:G47C
  • S:A50G
  • S:G54A
  • S:G67A
  • S:G99A
  • S:G100A
  • S:C178G
  • S:T181C
  • S:G189A
  • S:T199C
  • S:G202A
  • S:T220C
  • S:G229A
  • S:C235T
  • S:A247G
  • S:G271A
  • S:T274C
    • Deletions
    None
    Insertions
    ins_S:1577:A

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:C11Y
  • GPC:R28I
  • GPC:G39S
  • GPC:P42L
  • GPC:P46Q
  • GPC:L56P
  • GPC:S90P
  • GPC:E91G
  • GPC:V98A
  • GPC:L105S
  • GPC:G108S
  • GPC:P112T
  • GPC:S113G
  • GPC:G119D
  • GPC:A122T
  • GPC:P123L
  • GPC:N131S
  • GPC:V146M

    • NP

  • NP:R15K
  • NP:R45K
  • NP:K91R
  • NP:T124A
  • NP:G125N
  • NP:L179Q
  • NP:H195R
  • NP:I246V
  • NP:S301G
  • NP:K428R
  • NP:V436I
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue