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PPD_001RUNB.1
Download
Download FASTA
Download metadata TSV
Display Name: Guinea/PPD_001RUNB.1/2024-12-11
E. V. Naidenova,
Y. M. Krasnov,
K. S. Zakharov,
M. Y. Kartashov,
A. V. Shipovalov,
A. B. Ibrahim,
E. A. Basov,
A. P. Smolina,
N. P. Guseva,
T. A. Polunina,
N. V. Kotova,
S. D. Katyshev,
S. Boumbaly &
M. S. Traore
Sample details
Collection date
2024-12-11
Country
Guinea
Isolate name
631
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-17 10:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Russian Antiplague Research Institute 'Microbe', Microbiology
INSDC
INSDC accession L
PV987604.1
INSDC accession M
PV987596.1
INSDC accession S
PV987588.1
NCBI release date
2025-08-09
Host
Host taxon ID
6941
Host name - scientific
Rhipicephalus microplus
Alignment and QC metrics L
Length L
11970
# of SNPs L
636
# of inserted bases L
3
# of deleted bases L
0
# of ambiguous bases L
0
# of unknown bases L
844
# of frame shifts L
0
Completeness L
91.86%
Alignment and QC metrics S
Length S
1673
# of SNPs S
233
# of inserted bases S
3
# of deleted bases S
1
# of ambiguous bases S
0
# of unknown bases S
25
# of frame shifts S
0
Completeness S
98.44%
Alignment and QC metrics M
Length M
3815
# of SNPs M
641
# of inserted bases M
1
# of deleted bases M
1
# of ambiguous bases M
0
# of unknown bases M
224
# of frame shifts M
1
Frame shifts M
GPC:1008-1010(nt:3112-3122)
Completeness M
66.92%
Submission details
Submission ID
PV987604.1.L/PV987596.1.M/PV987588.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-17 10:51:39 UTC
Date released
2025-09-17 11:10:15 UTC
Earliest release date
2025-08-09
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
G
93
A
L:
A
113
G
L:
G
116
A
L:
G
175
A
L:
G
190
A
L:
C
193
T
L:
C
205
T
L:
G
217
A
L:
C
223
T
L:
A
231
G
L:
C
244
T
L:
T
250
C
L:
T
253
C
L:
T
254
A
L:
G
301
A
L:
C
313
T
L:
G
328
A
L:
T
340
C
Show more
M
M:
C
662
T
M:
G
667
C
M:
C
673
T
M:
T
680
C
M:
G
681
A
M:
C
683
T
M:
A
684
G
M:
T
686
C
M:
A
688
C
M:
G
693
A
M:
A
696
T
M:
T
698
C
M:
G
699
A
M:
A
700
G
M:
C
704
A
M:
G
708
A
M:
A
709
T
M:
T
711
C
Show more
S
S:
C
14
A
S:
G
20
T
S:
G
54
A
S:
G
67
A
S:
C
82
T
S:
G
123
A
S:
G
134
A
S:
G
136
A
S:
C
142
T
S:
C
154
T
S:
T
155
C
S:
C
166
T
S:
G
169
A
S:
T
175
C
S:
C
178
A
S:
T
182
C
S:
G
189
A
S:
G
190
A
Show more
Deletions
M:3111, S:1585
Insertions
ins_L:6460:AAA, ins_M:3122:A, ins_S:6:G, ins_S:1579:CC
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
G
192
A
GPC:
D
197
N
GPC:
S
198
G
GPC:
H
199
P
GPC:
A
201
T
GPC:
T
202
S
GPC:
E
203
R
GPC:
H
204
Q
GPC:
E
206
M
GPC:
S
207
P
GPC:
L
208
S
GPC:
G
215
N
GPC:
L
216
P
GPC:
M
217
T
GPC:
T
221
A
GPC:
H
225
L
GPC:
A
229
V
GPC:
T
230
P
Show more
NP
NP:
G
23
E
NP:
V
27
I
NP:
Y
34
H
NP:
R
45
K
NP:
S
109
N
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
A
271
S
NP:
S
301
G
NP:
N
419
S
NP:
V
436
I
NP:
T
439
K
NP:
N
442
I
NP:
Q
444
K
RdRp
RdRp:
S
6
N
RdRp:
I
13
V
RdRp:
A
14
T
RdRp:
N
52
S
RdRp:
Y
60
N
RdRp:
N
206
Y
RdRp:
I
223
M
RdRp:
S
409
G
RdRp:
N
421
S
RdRp:
C
422
Y
RdRp:
V
444
I
RdRp:
S
498
N
RdRp:
S
504
C
RdRp:
I
505
T
RdRp:
V
515
I
RdRp:
C
648
S
RdRp:
K
673
R
RdRp:
R
764
K
Show more
Deletions
GPC:1007
Insertions
ins_RdRp:2129:E
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