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PPD_001RUP9.1
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Download FASTA
Download metadata TSV
Display Name: Guinea/PPD_001RUP9.1/2024-12-11
E. V. Naidenova,
Y. M. Krasnov,
K. S. Zakharov,
M. Y. Kartashov,
A. V. Shipovalov,
A. B. Ibrahim,
E. A. Basov,
A. P. Smolina,
N. P. Guseva,
T. A. Polunina,
N. V. Kotova,
S. D. Katyshev,
S. Boumbaly &
M. S. Traore
Sample details
Collection date
2024-12-11
Country
Guinea
Isolate name
650
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-17 10:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Russian Antiplague Research Institute 'Microbe', Microbiology
INSDC
INSDC accession L
PV987605.1
INSDC accession M
PV987597.1
INSDC accession S
PV987589.1
NCBI release date
2025-08-09
Host
Host taxon ID
6941
Host name - scientific
Rhipicephalus microplus
Alignment and QC metrics L
Length L
11970
# of SNPs L
417
# of inserted bases L
3
# of deleted bases L
0
# of ambiguous bases L
0
# of unknown bases L
799
# of frame shifts L
0
Completeness L
92.24%
Alignment and QC metrics S
Length S
1655
# of SNPs S
174
# of inserted bases S
19
# of deleted bases S
18
# of ambiguous bases S
0
# of unknown bases S
96
# of frame shifts S
0
Completeness S
93.18%
Alignment and QC metrics M
Length M
2921
# of SNPs M
298
# of inserted bases M
1
# of deleted bases M
0
# of ambiguous bases M
0
# of unknown bases M
851
# of frame shifts M
1
Frame shifts M
GPC:490-1685(nt:1560-5147)
Completeness M
38.56%
Submission details
Submission ID
PV987605.1.L/PV987597.1.M/PV987589.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-17 10:51:39 UTC
Date released
2025-09-17 11:10:15 UTC
Earliest release date
2025-08-09
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
G
93
A
L:
G
112
C
L:
A
113
G
L:
C
133
T
L:
C
193
T
L:
C
205
T
L:
G
217
A
L:
A
220
G
L:
C
223
T
L:
T
229
C
L:
T
253
C
L:
T
254
A
L:
G
286
A
L:
G
301
A
L:
C
313
T
L:
A
316
G
L:
C
331
T
L:
T
340
C
Show more
M
M:
A
1556
G
M:
A
1577
T
M:
T
1586
A
M:
T
1587
C
M:
G
1589
A
M:
G
1592
A
M:
G
1595
A
M:
G
1604
A
M:
A
1607
G
M:
A
1628
C
M:
A
1629
C
M:
C
1631
T
M:
C
1634
T
M:
T
1637
C
M:
T
1644
C
M:
T
1649
G
M:
A
1652
C
M:
A
1655
G
Show more
S
S:
G
20
T
S:
G
54
A
S:
C
82
T
S:
A
118
G
S:
G
136
A
S:
C
142
T
S:
C
154
T
S:
T
155
C
S:
C
166
T
S:
G
169
A
S:
T
175
C
S:
C
178
A
S:
T
182
C
S:
G
189
A
S:
G
190
A
S:
C
208
T
S:
C
217
T
S:
C
235
T
Show more
Deletions
S:1542-1547, S:1573, S:1574, S:1610-1619
Insertions
ins_L:6457:AAN, ins_M:1559:A, ins_S:1563:TATG, ins_S:1566:AT, ins_S:1579:ATC, ins_S:1629:CTATCTTTCA
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
Y
34
H
NP:
R
45
K
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
A
271
S
NP:
S
301
G
NP:
Q
405
L
NP:
V
436
I
NP:
T
439
K
RdRp
RdRp:
S
6
N
RdRp:
I
13
V
RdRp:
Y
60
N
RdRp:
N
206
Y
RdRp:
C
422
Y
RdRp:
S
498
N
RdRp:
I
505
T
RdRp:
R
764
K
RdRp:
T
767
A
RdRp:
P
774
L
RdRp:
S
782
D
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
N
885
K
RdRp:
A
1038
T
RdRp:
K
1167
R
RdRp:
V
1228
I
Show more
Deletions
None
Insertions
ins_RdRp:2127:X
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