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PPD_001RUT1.1
Download
Download FASTA
Download metadata TSV
Display Name: Guinea/PPD_001RUT1.1/2024-12-13
E. V. Naidenova,
Y. M. Krasnov,
K. S. Zakharov,
M. Y. Kartashov,
A. V. Shipovalov,
A. B. Ibrahim,
E. A. Basov,
A. P. Smolina,
N. P. Guseva,
T. A. Polunina,
N. V. Kotova,
S. D. Katyshev,
S. Boumbaly &
M. S. Traore
Sample details
Collection date
2024-12-13
Country
Guinea
Isolate name
751
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-17 10:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Russian Antiplague Research Institute 'Microbe', Microbiology
INSDC
INSDC accession L
PV987609.1
INSDC accession M
PV987601.1
INSDC accession S
PV987593.1
NCBI release date
2025-08-09
Host
Host taxon ID
34611
Host name - scientific
Rhipicephalus annulatus
Alignment and QC metrics L
Length L
11970
# of SNPs L
500
# of inserted bases L
3
# of deleted bases L
0
# of ambiguous bases L
0
# of unknown bases L
1487
# of frame shifts L
0
Completeness L
86.55%
Alignment and QC metrics M
Length M
2912
# of SNPs M
310
# of inserted bases M
0
# of deleted bases M
0
# of ambiguous bases M
0
# of unknown bases M
841
# of frame shifts M
0
Completeness M
38.59%
Alignment and QC metrics S
Length S
1650
# of SNPs S
170
# of inserted bases S
6
# of deleted bases S
8
# of ambiguous bases S
0
# of unknown bases S
136
# of frame shifts S
0
Completeness S
90.67%
Submission details
Submission ID
PV987609.1.L/PV987601.1.M/PV987593.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-17 10:51:39 UTC
Date released
2025-09-17 11:10:15 UTC
Earliest release date
2025-08-09
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
G
93
A
L:
A
113
G
L:
G
116
A
L:
G
175
A
L:
G
190
A
L:
C
193
T
L:
C
205
T
L:
G
217
A
L:
C
223
T
L:
A
231
G
L:
C
244
T
L:
T
250
C
L:
T
253
C
L:
T
254
A
L:
G
301
A
L:
C
313
T
L:
G
328
A
L:
C
332
T
Show more
M
M:
A
1577
T
M:
T
1586
A
M:
T
1587
C
M:
G
1589
A
M:
G
1592
A
M:
G
1595
A
M:
G
1604
A
M:
A
1607
G
M:
A
1628
C
M:
A
1629
C
M:
C
1631
T
M:
C
1634
T
M:
T
1637
C
M:
T
1644
C
M:
T
1649
G
M:
A
1652
C
M:
A
1655
G
M:
A
1658
G
Show more
S
S:
G
20
T
S:
G
54
A
S:
A
118
G
S:
G
123
A
S:
G
134
A
S:
G
136
A
S:
C
142
T
S:
T
155
C
S:
C
166
T
S:
T
175
C
S:
C
178
A
S:
T
182
C
S:
G
189
A
S:
G
190
A
S:
C
208
T
S:
C
235
T
S:
C
244
T
S:
T
250
A
Show more
Deletions
S:1531-1533, S:1573, S:1574, S:1624-1626
Insertions
ins_L:6460:AAA, ins_S:1584:NAN, ins_S:1613:A, ins_S:1616:TG
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
T
513
P
GPC:
P
523
S
GPC:
S
524
D
GPC:
D
525
G
GPC:
I
541
V
GPC:
G
543
N
GPC:
V
578
I
GPC:
R
579
K
GPC:
T
589
S
GPC:
G
590
E
GPC:
K
591
R
GPC:
N
592
P
GPC:
V
598
T
GPC:
K
601
E
GPC:
Y
606
F
GPC:
R
609
K
GPC:
V
626
I
GPC:
T
633
S
Show more
NP
NP:
G
23
E
NP:
V
27
I
NP:
Y
34
H
NP:
R
45
K
NP:
S
109
N
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
I
246
V
NP:
R
270
K
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
I
13
V
RdRp:
A
14
T
RdRp:
N
52
S
RdRp:
Y
60
N
RdRp:
N
206
Y
RdRp:
C
422
Y
RdRp:
V
444
I
RdRp:
S
498
N
RdRp:
S
504
C
RdRp:
I
505
T
RdRp:
V
515
I
RdRp:
C
648
S
RdRp:
K
673
R
RdRp:
R
764
K
RdRp:
T
767
A
RdRp:
R
770
K
RdRp:
P
774
L
Show more
Deletions
None
Insertions
ins_RdRp:2129:E
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