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PPD_001UDY0.1
Download
Download FASTA
Download metadata TSV
Reunion/S54b38/2025-07-03
E. Frumence,
R. Klitting,
K. Serres,
Y. Shao,
M. Vincent,
M. S. Gill,
M. A. Suchard,
P. Lemey,
X. de Lamballerie,
M.-C. Jaffar-Bandjee,
S. Dellicour &
M. C. Jaffar Bandjee
CHU de la Reunion, Laboratoire de virologie, CNR arbovirus Associe
Sample details
Collection date
2025-07-03
Sampling location
Reunion
Isolate name
S54b38
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
II-ECSA
INSDC
INSDC accession
PX800409.1
NCBI release date
2026-02-16
NCBI update date
2026-02-16
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PX800409.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-28 15:38:23 UTC
Date released
2026-09-28 16:03:01 UTC
Earliest release date
2026-02-16
Files
Annotations
PPD_001UDY0.1.embl
Alignment and QC
Length
11237 (95%)
# of SNPs
402
Nucleotide mutations
Mutations called relative to the
NC_004162.2
reference
Substitutions
C
161
T
G
202
A
T
268
C
T
271
C
A
280
T
C
301
A
T
319
C
T
334
C
A
360
G
G
421
A
A
469
G
A
493
C
G
542
A
T
590
G
T
610
C
C
655
T
C
661
T
T
670
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_004162.2
reference
Substitutions
6K
6K:
I
54
V
6K:
S
60
N
C
C:
K
63
R
C:
K
122
R
C:
T
143
A
E1
E1:
N
9
S
E1:
T
37
I
E1:
A
226
V
E1:
S
250
P
E1:
M
269
V
E1:
I
317
V
E1:
V
322
A
E1:
K
324
R
E1:
G
348
E
E1:
V
399
I
E2
E2:
G
57
K
E2:
I
74
T
E2:
G
79
E
E2:
V
85
A
E2:
S
118
G
E2:
K
149
R
E2:
N
160
T
E2:
A
164
T
E2:
L
181
M
E2:
S
194
G
E2:
L
210
Q
E2:
I
211
T
E2:
V
222
I
E2:
A
227
V
E2:
A
246
D
E2:
M
267
R
E2:
Q
282
K
E2:
S
299
N
E2:
A
344
T
E2:
I
415
L
E3
E3:
I
23
T
nsP1
nsP1:
P
29
S
nsP1:
D
75
E
nsP1:
N
95
S
nsP1:
V
156
I
nsP1:
L
172
V
nsP1:
E
234
K
nsP1:
M
383
L
nsP1:
I
384
L
nsP1:
T
481
I
nsP1:
A
487
T
nsP1:
Q
488
K
nsP1:
E
498
K
nsP1:
L
507
R
nsP2
nsP2:
R
34
C
nsP2:
H
374
Y
nsP2:
N
495
S
nsP2:
V
516
I
nsP2:
P
562
H
nsP2:
I
581
V
nsP2:
A
604
V
nsP2:
C
642
Y
nsP2:
S
643
N
nsP3
nsP3:
V
19
A
nsP3:
T
122
I
nsP3:
V
175
I
nsP3:
A
196
V
nsP3:
P
326
S
nsP3:
Q
328
P
nsP3:
V
331
A
nsP3:
T
337
A
nsP3:
T
338
M
nsP3:
Q
344
R
nsP3:
K
352
E
nsP3:
I
376
T
nsP3:
T
378
M
nsP3:
A
382
T
nsP3:
V
399
I
nsP3:
L
410
Q
nsP3:
Q
439
R
nsP3:
M
449
T
Show more
nsP4
nsP4:
Q
46
H
nsP4:
T
101
V
nsP4:
K
230
N
nsP4:
V
497
A
nsP4:
Q
500
L
nsP4:
I
514
T
nsP4:
V
555
I
nsP4:
V
604
I
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
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