This is the main branch
X
Pathoplexus
RSV-A
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
HMPV
Mpox Virus
RSV-A
RSV-B
West Nile Virus
Browse
Submit
SeqSets
News
About
Docs
Login
Pathoplexus
Browse
Submit
SeqSets
News
About
Docs
Login
API docs
Governance
Funding
Contact
Status
PPD_0022YJT.1
Download
Download FASTA
Download metadata TSV
Display Name: China/PPD_0022YJT.1/2007-01-17
Z. Y. Zhang,
L. N. Du,
X. Chen,
Y. Zhao,
E. M. Liu,
X. Q. Yang,
X. D. Zhao,
Z.-Y. Zhang,
L.-N. Du,
E.-M. Liu,
X.-Q. Yang &
X.-D. Zhao
Submission details
Submission ID
GU550456.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-04 13:19:30 UTC
Date released
2025-07-04 13:23:04 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-07-04 13:20
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Children's Hospital of Chongqing Medical University, Division of Immunology
Alignment and QC metrics
Completeness
2.25%
Length
270
Total ambiguous nucs
0
Total deleted nucs
72
Total frame shifts
0
Total inserted nucs
0
Total SNPs
12
Total unknown nucs
0
Sample details
Earliest release date
2010-03-14
Collection country
China
Collection date
2007-01-17
Collection date (lower bound)
2007-01-17
Collection date (upper bound)
2007-01-17
Host
Host name - scientific
Homo sapiens
Host taxon ID
9606
INSDC
INSDC accession
GU550456.1
NCBI release date
2010-03-14
NCBI update date
2010-04-02
Lineage
Lineage
A.3.1
Nucleotide mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
G
5322
A
T
5332
C
T
5341
C
G
5346
A
A
5360
G
T
5368
C
C
5374
A
G
5379
T
A
5409
C
T
5540
A
C
5544
T
T
5592
C
Deletions
5435-5506
Insertions
None
Amino acid mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
G
G:
G
224
E
G:
G
232
E
G:
N
237
D
G:
S
243
I
G:
K
253
T
G:
Y
297
N
G:
P
298
L
G:
L
314
P
Deletions
G:262-285
Insertions
None
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue