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PPD_0022YNK.1

Display Name: China/PPD_0022YNK.1/2013-12-20
X. Yu, Y. Kou, D. Xia, J. Li, X. Yang, Y. Zhou & X. He

Submission details

Submission ID
KP336502.1
Submitting group
Date submitted
2025-07-16 15:12:40 UTC
Date released
2025-07-16 15:19:25 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-16 15:13insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Hangzhou Center for Disease Control and Prevention, Microbiology Laboratory

Alignment and QC metrics

Completeness
2.25%
Length
270
Total ambiguous nucs
0
Total deleted nucs
72
Total frame shifts
0
Total inserted nucs
0
Total SNPs
10
Total unknown nucs
0

Sample details

Earliest release date
2015-08-05
Collection country
China
Collection date
2013-12-20
Collection date (lower bound)
2013-12-20
Collection date (upper bound)
2013-12-20
Isolate name
HZ11-s67

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2015-08-05
NCBI update date
2015-08-05

Lineage

Lineage
A.3.1

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T5332C
  • T5341C
  • G5346A
  • A5360G
  • T5368C
  • C5374A
  • G5379T
  • A5409C
  • T5540A
  • T5592C
    • Deletions
    5435-5506
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    G

  • G:G232E
  • G:N237D
  • G:S243I
  • G:K253T
  • G:Y297N
  • G:L314P
    • Deletions
    G:262-285
    Insertions
    None

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