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PPD_002300S.1

Display Name: Spain/PPD_002300S.1/2007-12-26
A. Trento, L. Abrego, R. Rodriguez-Fernandez, M. I. Gonzalez-Sanchez, F. Gonzalez-Martinez, A. Delfraro, J. M. Pascale, J. Arbiza, J. A. Melero & A. Delfaro

Submission details

Submission ID
KP792352.1
Submitting group
Date submitted
2025-07-16 15:12:40 UTC
Date released
2025-07-16 15:19:25 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-16 15:13insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Instituto de Salud Carlos III, Laboratorio de Biologia Viral

Alignment and QC metrics

Completeness
6.46%
Length
912
Total ambiguous nucs
0
Total deleted nucs
72
Total frame shifts
0
Total inserted nucs
0
Total SNPs
27
Total unknown nucs
0

Sample details

Earliest release date
2015-06-06
Collection country
Spain
Collection date
2007-12-26
Collection date (lower bound)
2007-12-26
Collection date (upper bound)
2007-12-26
Isolate name
MAD/GM1_3/07

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2015-06-06
NCBI update date
2015-06-06

Lineage

Lineage
A.3.1

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • A4650C
  • G4747A
  • C4807T
  • C4863T
  • C4919T
  • T4936C
  • C4952T
  • T5052A
  • C5069A
  • T5075C
  • T5076A
  • A5086G
  • T5110C
  • C5128T
  • C5273A
  • G5322A
  • T5332C
  • T5341C
    • Deletions
    5435-5506
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:Q140K
  • G:L142Q
  • G:L208I
  • G:G224E
  • G:G232E
  • G:N237D
  • G:S243I
  • G:K253T
  • G:Y297N
  • G:P298L
  • G:L314P
    • Deletions
    G:262-285
    Insertions
    None

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