This is the main branch

PPD_002305G.1

Display Name: Central_African_Republic/PPD_002305G.1
C. Snoeck

Submission details

Submission ID
HG994006.1
Submitting group
Date submitted
2025-07-04 13:19:30 UTC
Date released
2025-07-04 13:23:04 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-04 13:20insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Luxembourg Institute of Health, Department of Infection and Immunity, Infectious Diseases Research Unit, 29 rue Henri Koch L-4354 Esch-sur-Alzette

INSDC

BioProject accession
INSDC accession
NCBI release date
2021-03-15
NCBI update date
2021-03-15

Alignment and QC metrics

Completeness
3.51%
Length
462
Total ambiguous nucs
0
Total deleted nucs
72
Total frame shifts
0
Total inserted nucs
0
Total SNPs
20
Total unknown nucs
0

Sample details

Earliest release date
2021-03-15
Collection country
Central African Republic
Collection date (upper bound)
2021-03-15

Lineage

Lineage
A.3.1.1

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • G5322A
  • T5332C
  • G5346A
  • T5368C
  • C5374A
  • G5379T
  • A5409C
  • T5416C
  • C5544T
  • T5592C
  • T5596A
  • A5613T
  • G5616T
  • C5632T
  • G5647A
  • G5648T
  • C5650T
  • T5682C
  • A5730G
  • T5762C
    • Deletions
    5435-5506
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12A

    • G

  • G:G224E
  • G:G232E
  • G:S243I
  • G:K253T
  • G:P298L
  • G:L314P
  • G:K321I
  • G:*322L
    • Deletions
    G:262-285
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue