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PPD_00230MH.1

Display Name: Spain/PPD_00230MH.1/2013-01-17
A. Trento, L. Abrego, R. Rodriguez-Fernandez, M. I. Gonzalez-Sanchez, F. Gonzalez-Martinez, A. Delfraro, J. M. Pascale, J. Arbiza, J. A. Melero & A. Delfaro

Submission details

Submission ID
KP792373.1
Submitting group
Date submitted
2025-07-16 15:12:40 UTC
Date released
2025-07-16 15:19:25 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-16 15:13insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Instituto de Salud Carlos III, Laboratorio de Biologia Viral

Alignment and QC metrics

Completeness
6.46%
Length
984
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
18
Total unknown nucs
0

Sample details

Earliest release date
2015-06-06
Collection country
Spain
Collection date
2013-01-17
Collection date (lower bound)
2013-01-17
Collection date (upper bound)
2013-01-17
Isolate name
MAD/GM2_14/12

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2015-06-06
NCBI update date
2015-06-06

Lineage

Lineage
A.D

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • A4650C
  • A4720G
  • C4863T
  • C4919T
  • T4936C
  • C4952T
  • T5052A
  • C5167T
  • C5268A
  • G5322A
  • C5374A
  • G5379T
  • A5435G
  • A5444C
  • T5491C
  • A5502G
  • T5561C
  • T5580C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:P206Q
  • G:G224E
  • G:S243I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:Y304H
  • G:L310P
    • Deletions
    None
    Insertions
    None

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