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PPD_00230R9.1

Display Name: Sudan/PPD_00230R9.1/2011-12-29
S. O. Khalil, H. N. Altayb, K. A. Anan, A. Y. H, I. M. Elkhidir & M. A. Hassan

Submission details

Submission ID
KP853084.1
Submitting group
Date submitted
2025-07-16 15:12:40 UTC
Date released
2025-07-16 15:19:25 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-16 15:13insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Khartoum, Institute of Endemic Diseases

Alignment and QC metrics

Completeness
1.64%
Length
249
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
11
Total unknown nucs
0

Sample details

Earliest release date
2015-07-05
Collection country
Sudan
Collection date
2011-12-29
Collection date (lower bound)
2011-12-29
Collection date (upper bound)
2011-12-29
Isolate name
176

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2015-07-05
NCBI update date
2015-07-05

Lineage

Lineage
A.3.1

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C4919A
  • A4932G
  • T4936C
  • A4949T
  • C4952T
  • T5052A
  • T5075C
  • T5076C
  • T5080C
  • C5155T
  • T5158C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    G

  • G:H90N
  • G:N94S
  • G:S100C
  • G:L101F
  • G:I134K
  • G:L142P
    • Deletions
    None
    Insertions
    None

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