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PPD_00230WZ.1

Display Name: USA/PPD_00230WZ.1/1979
S. R. Das, R. A. Halpin, V. Puri, A. Akopov, N. Fedorova, T. Stockwell, P. Amedeo, B. Bishop, D. Katzel, S. Schobel, S. Shrivastava, D. E. Wentworth & M. Caserta

Submission details

Submission ID
KP856969.1
Submitting group
Date submitted
2025-07-16 15:12:40 UTC
Date released
2025-07-16 15:19:25 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-16 15:13insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
J. Craig Venter Institute

INSDC

BioProject accession
INSDC accession
NCBI release date
2015-04-04
NCBI update date
2015-04-04

Alignment and QC metrics

Completeness
99.66%
Length
15082
Total ambiguous nucs
0
Total deleted nucs
98
Total frame shifts
0
Total inserted nucs
7
Total SNPs
535
Total unknown nucs
0

Sample details

Earliest release date
2015-04-04
Collection subdivision level 1
New York
Collection country
USA
Collection date
1979
Collection date (lower bound)
1979-01-01
Collection date (upper bound)
1979-12-31

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
A

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T66A
  • C81T
  • C90T
  • G108A
  • C115T
  • G177T
  • C183T
  • T204G
  • C228A
  • G240A
  • T255C
  • A315G
  • C477T
  • C480T
  • C492T
  • C530T
  • T583C
  • T616C
    • Deletions
    2299, 3132-3154, 4592, 5444-5515, 15108
    Insertions
    ins_4173:T, ins_15054:TCCCAT

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:A16T
  • F:S105N
  • F:P112S
  • F:S276N
  • F:S377N
  • F:A540S

    • G

  • G:R15K
  • G:P71L
  • G:N81S
  • G:H90Y
  • G:L101F
  • G:G106E
  • G:S111T
  • G:T119P
  • G:A122V
  • G:P126L
  • G:I133T
  • G:I134K
  • G:L142Q
  • G:Q156P
  • G:T200I
  • G:L208I
  • G:P215L
  • G:P222S

    • L

  • L:S6N
  • L:T103I
  • L:P171L
  • L:Q177H
  • L:S216N
  • L:S240N
  • L:R256K
  • L:I388V
  • L:D575E
  • L:K754R
  • L:L1180F
  • L:L1438Q
  • L:N1471H
  • L:N1475D
  • L:S1700N
  • L:N1723C
  • L:E1725D
  • L:K1726N

    • M2-1

  • M2-1:V125I
  • M2-1:S176P

    • M2-2

  • M2-2:N25S
  • M2-2:Y26C
  • M2-2:I39F
  • M2-2:S46N
  • M2-2:P50S
  • M2-2:D52N
  • M2-2:T69I

    • N

  • N:K84R
  • N:V352A

    • NS1

  • NS1:Q36H

    • NS2

  • NS2:T9A
  • NS2:K38R

    • P

  • P:L55P
  • P:I66T

    • SH

  • SH:I31L
  • SH:C45Y
    • Deletions
    G:265-288
    Insertions
    None

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