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PPD_00230YV.1

Display Name: Brazil/PPD_00230YV.1/2007
J. P. L. Zukurov & E. L. Durigon

Submission details

Submission ID
HM021190.1
Submitting group
Date submitted
2025-07-04 13:19:30 UTC
Date released
2025-07-04 13:23:04 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-04 13:20insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Sao Paulo, Department of Microbiology, Institute of Biomedical Science

Alignment and QC metrics

Completeness
2.08%
Frame shifts
G:310-322(nt:5578-5617)
Length
234
Total ambiguous nucs
0
Total deleted nucs
83
Total frame shifts
1
Total inserted nucs
0
Total SNPs
29
Total unknown nucs
0

Sample details

Earliest release date
2012-03-31
Collection country
Brazil
Collection date
2007
Collection date (lower bound)
2007-01-01
Collection date (upper bound)
2007-12-31
Isolate name
BR1576

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2012-03-31
NCBI update date
2023-01-24

Lineage

Lineage
A.2.1.1

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C5295T
  • C5308T
  • G5322A
  • T5325C
  • T5328C
  • C5329T
  • T5332C
  • T5341C
  • G5346A
  • C5364T
  • T5368C
  • A5372C
  • C5374A
  • A5376C
  • G5379T
  • T5399A
  • C5400A
  • A5403G
    • Deletions
    5411-5416, 5435-5506, 5576, 5577, 5587-5589
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    G

  • G:P215L
  • G:G224E
  • G:V225A
  • G:L226P
  • G:G232E
  • G:T238I
  • G:T241P
  • G:N242T
  • G:S243I
  • G:S250N
  • G:N251S
  • G:K253T
  • G:G254L
  • G:T293S
  • G:Y297N
  • G:P298T
  • G:V303I
    • Deletions
    G:255, G:256, G:262-285, G:309
    Insertions
    None

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