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PPD_00230ZT.1

Display Name: PPD_00230ZT.1
M. N. Widjojoatmodjo, L. Bogaert, B. Meek, R. Zahn, C. A. Warnar, D. N. Czapka, R. Bolder, M. van der Meer, A. Gecgel, E. van der Helm, J. Vellinga, J. Custers, J. Serroyen, K. Radosevic, H. Schuitemaker, F. Coenjaerts & M. Viveen

Submission details

Submission ID
KP860089.1
Submitting group
Date submitted
2025-07-16 15:12:40 UTC
Date released
2025-07-16 15:19:25 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-16 15:13insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Janssen Infectious Diseases and Vaccines, Viral Vaccines

Alignment and QC metrics

Completeness
11.33%
Length
1725
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
71
Total unknown nucs
0

Sample details

Earliest release date
2015-04-27
Collection date (upper bound)
2015-04-27
Isolate name
CL57 (CL57-v314)

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2015-04-27
NCBI update date
2015-04-27

Lineage

Lineage
A.2.1

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T5726A
  • T5762C
  • C5838T
  • T5909A
  • C5915T
  • A5930G
  • G6010A
  • A6035G
  • C6059T
  • C6068T
  • C6070A
  • T6086C
  • A6113C
  • C6155T
  • A6158G
  • C6161T
  • G6164A
  • T6242A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:S105N
  • F:T125N
  • F:S276N
  • F:A518V
  • F:A540L
  • F:L547F
    • Deletions
    None
    Insertions
    None

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