PPD_0028U3G.1

Tajikistan/PPD_0028U3G.1/2023-05-23

J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

UK Health Security Agency, Research & Evaluation

Sample details

Collection date

2023-05-23

Sampling location

Tajikistan

Isolate name

CCHFV_23_178

Data use terms

Changed	User	Data use terms
2026-04-11 16:24	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession M

PV390620.1

INSDC accession S

PV390613.1

NCBI release date

2025-04-05

Host

hard ticks; hardbacked ticks; scale ticks (Hyalomma anatolicum)

Submission details

Submission ID

PV390620.1.M/PV390613.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-04-11 16:23:38 UTC

Date released

2026-04-11 17:44:40 UTC

Earliest release date

2025-04-05

Lineage

Segment S Lineage

IV.2

Alignment and QC

Length M

3673 (37.4%)

# of SNPs M

330

# of inserted bases M

# of ambiguous bases M

# of unknown bases M

1647

Length S

919 (54.8%)

# of SNPs S

112

# of ambiguous bases S

# of unknown bases S

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

A1662G
T1667C
A1679G
A1682G
A1688G
A1694G
A1709G
G1712A
C1715T
G1719A
C1721T
C1724T
C1736T
G1739A
C1760T
C1766T
A1773G
A1778G

S

G429A
A439G
C445T
T446C
G448C
A460G
C478T
C484A
C487T
A490G
T496C
C497T
G499A
A503C
C505T
A508G
C514T
G538A

Deletions

N/A

Insertions

M

ins_5171:C

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references