PPD_0028UVX.1

Tajikistan/PPD_0028UVX.1/2023-05-23

J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

UK Health Security Agency, Research & Evaluation

Sample details

Collection date

2023-05-23

Sampling location

Tajikistan

Isolate name

CCHFV_22_177

Data use terms

Changed	User	Data use terms
2026-04-11 16:24	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession L

PV738574.1

INSDC accession M

PV738573.1

INSDC accession S

PV738572.1

NCBI release date

2025-06-15

Host

hard ticks; hardbacked ticks; scale ticks (Hyalomma anatolicum)

Submission details

Submission ID

PV738574.1.L/PV738573.1.M/PV738572.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-04-11 16:23:38 UTC

Date released

2026-04-11 17:44:40 UTC

Earliest release date

2025-06-15

Lineage

Segment S Lineage

IV.2

Alignment and QC

Length M

5296 (90.6%)

# of SNPs M

927

# of inserted bases M

# of ambiguous bases M

# of unknown bases M

422

Length S

1237 (72.6%)

# of SNPs S

170

# of inserted bases S

# of ambiguous bases S

# of unknown bases S

Length L

11768 (70.4%)

# of SNPs L

1159

# of inserted bases L

# of deleted bases L

# of ambiguous bases L

# of unknown bases L

3202

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

A379G
A385T
A388G
T394A
T398C
T403C
C415T
A416G
C421T
T466C
G472A
C475T
C481T
G490A
T493C
G502A
T508A
A526G

M

G56A
A57C
A70G
T71A
A80G
T83C
G84T
C85T
T86C
C92T
C96T
T98C
T100C
T102C
A108T
A112G
A116T
A117G

S

G429A
A439G
C445T
T446C
G448C
A460G
C478T
C484A
C487T
A490G
T496C
C497T
G499A
A503C
C514T
G538A
G544A
C553A

Deletions

L

12000, 12086, 12087

Insertions

L

ins_11931:AT, ins_12051:TAGTGCAATTCTTTCAGT, ins_12108:TTGATTATTTCTAGGGTG

M

ins_5171:C

S

ins_1579:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references