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PPD_0028VCX.1

France/PPD_0028VCX.1/2024
M. Gasparine

University of Corsica, Unite des Virus Emergents

Sample details

Collection date
2024
Sampling location
France
Isolate name
ECH

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-11 16:24insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession L
NCBI release date
2025-08-10

Host

Host

Submission details

Submission ID
PV976881.1.L
Submitting group
Date submitted
2026-04-11 16:23:38 UTC
Date released
2026-04-11 17:44:40 UTC
Earliest release date
2025-08-10

Alignment and QC

Length L
10857 (87.2%)
# of SNPs L
669
# of inserted bases L
82
# of deleted bases L
92
# of unknown bases L
309
# of frame shifts L
26
# of stop codons L
3
Frame shifts L
RdRp:497-590(nt:1563-1846),RdRp:596-617(nt:1862-1926),RdRp:648-657(nt:2016-2046),RdRp:734-797(nt:2274-2467),RdRp:817-1073(nt:2525-3294),RdRp:1098-1107(nt:3368-3397),RdRp:1115-1121(nt:3417-3439),RdRp:1130-1139(nt:3464-3492),RdRp:1162-1168(nt:3558-3580),RdRp:1173-1178(nt:3593-3608),RdRp:1189-1204(nt:3640-3688),RdRp:1216-1269(nt:3722-3883),RdRp:1285-1311(nt:3927-4009),...
Stop Codons L
RdRp:1206,RdRp:3578,RdRp:3693

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G1321C
  • A1375G
  • G1408A
  • T1420C
  • C1435T
  • G1448C
  • C1495T
  • T1590C
  • T1732C
  • C1743T
  • G1756C
  • G1797A
  • G1817C
  • T1877C
  • A1879G
  • G1980C
  • C2006T
  • G2041A
Deletions

L

1562, 1604, 1927, 2015, 2273, 2288, 2468, 2524, 2894, 3295, 3364-3367, 3416, 3440, 3441, 3463, 3476, 3493, 3557, 3812-3814, 3884-3890, 3926, 4010, 4011, 4043, 4061, 4117, 4130-4133, 5045, 7277, 7438, 8696, 8920, 8954, 8955, 8981, 9422, 9443, 10328, 10640, 10641, 10675, 10676, 10769-10772, 10787, 10850-10852, 10874, 10895-10900, 11171-11173, 11268-11272, 11306-11308, 11336, 11703-11706,...
Insertions

L

ins_1657:C, ins_1846:C, ins_1861:A, ins_2046:G, ins_3397:G, ins_3580:G, ins_3592:TA, ins_3608:C, ins_3639:CAGA, ins_3670:G, ins_3688:C, ins_3721:T, ins_4159:GA, ins_4180:C, ins_4201:G, ins_4250:C, ins_4954:AG, ins_8650:A, ins_8896:GA, ins_10690:AG, ins_10702:TC, ins_10718:G, ins_10960:G, ins_10998:GC, ins_11026:T, ins_11041:TGA, ins_11100:GA, ins_11114:G, ins_11217:G, ins_11233:A,...

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

RdRp

  • RdRp:Q415H
  • RdRp:D458H
  • RdRp:R635P
  • RdRp:K673E
  • RdRp:D693N
  • RdRp:S695Q
  • RdRp:R704K
  • RdRp:S724P
  • RdRp:E804K
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:Q815E
  • RdRp:C1079R
  • RdRp:R1081T
  • RdRp:V1087M
  • RdRp:C1091Y
  • RdRp:E1092G
  • RdRp:N1093E
Deletions

RdRp

RdRp:496, RdRp:647, RdRp:733, RdRp:798, RdRp:1095-1097, RdRp:1114, RdRp:1122, RdRp:1161, RdRp:1270-1272, RdRp:1284, RdRp:1312-1314, RdRp:1323, RdRp:1352, RdRp:1353, RdRp:1657, RdRp:2874, RdRp:3116, RdRp:3123, RdRp:3534, RdRp:3571, RdRp:3593, RdRp:3600, RdRp:3629, RdRp:3897, RdRp:3898
Insertions

RdRp

ins_RdRp:1178:Q, ins_RdRp:1187:YR, ins_RdRp:1391:A, ins_RdRp:3655:E*

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