PPD_0028VFR.1

France/PPD_0028VFR.1/2024

M. Gasparine & A. Falchi

University of Corsica, Unite des Virus Emergents

Sample details

Collection date

2024

Sampling location

France

Isolate name

590

Data use terms

Changed	User	Data use terms
2026-04-11 16:24	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession M

PV976884.1

INSDC accession S

PV976887.1

NCBI release date

2025-08-10

Host

ticks (Ixodoidea)

Submission details

Submission ID

PV976884.1.M/PV976887.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-04-11 16:23:38 UTC

Date released

2026-04-11 17:44:40 UTC

Earliest release date

2025-08-10

Lineage

Segment S Lineage

III

Alignment and QC

Length S

1673 (100%)

# of SNPs S

127

# of inserted bases S

Length M

5206 (36.7%)

# of SNPs M

640

# of inserted bases M

# of deleted bases M

# of unknown bases M

3191

# of frame shifts M

Frame shifts M

GPC:18-74(nt:144-314),GPC:95-122(nt:374-456),GPC:318-326(nt:1043-1070),GPC:352-524(nt:1146-1664),GPC:543-560(nt:1718-1771),GPC:1084-1148(nt:3340-3535),GPC:1162-1685(nt:3574-5147)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

G50T
A51G
A52T
G53A
G56T
A57G
T58A
T59A
G60A
A64G
T65A
C66T
A69G
A70T
T71G
T72A
C74G
G76A

S

G20T
A50G
G54A
G67A
G99A
A124G
C166T
C178A
G189A
T199C
G202A
A209G
C235T
C241T
C244T
A247G
G271A
C295T

Deletions

M

315, 316, 346-373, 1029-1042, 1144, 1145, 1515, 1665, 1716, 1717, 1772, 3536, 3537, 3573, 3674

Insertions

M

ins_143:GCGGGGTTGCCAGT, ins_456:GCTCCAGGTGCATCCACTCCAAGCAACACCACATCAAACAAACCAGATGTCAACTCATTCACAT, ins_1070:AC, ins_1295:A, ins_3339:G, ins_3383:T, ins_5084:TTGATG, ins_5108:G, ins_5145:GACGAATC

S

ins_1577:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references