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PPD_0028VS2.1

Guinea/PPD_0028VS2.1/2024-12-11
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, M. Y. Kartashov, A. V. Shipovalov, A. B. Ibrahim, E. A. Basov, A. P. Smolina, N. P. Guseva, T. A. Polunina, N. V. Kotova, S. D. Katyshev, S. Boumbaly & M. S. Traore

Russian Antiplague Research Institute 'Microbe', Microbiology

Sample details

Collection date
2024-12-11
Sampling location
Guinea
Isolate name
631

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-11 16:24insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2025-08-09

Host

Host

Submission details

Submission ID
PV987604.1.L/PV987596.1.M/PV987588.1.S
Submitting group
Date submitted
2026-04-11 16:23:38 UTC
Date released
2026-04-11 17:44:40 UTC
Earliest release date
2025-08-09

Lineage

Segment S Lineage
IV.1

Alignment and QC

Length L
11970 (91.9%)
# of SNPs L
636
# of inserted bases L
3
# of unknown bases L
844
Length S
1673 (98.5%)
# of SNPs S
241
# of inserted bases S
1
# of unknown bases S
25
Length M
3815 (66.9%)
# of SNPs M
648
# of unknown bases M
224

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G93A
  • A113G
  • G116A
  • G175A
  • G190A
  • C193T
  • C205T
  • G217A
  • C223T
  • A231G
  • C244T
  • T250C
  • T253C
  • T254A
  • G301A
  • C313T
  • G328A
  • T340C

M

  • C662T
  • G667C
  • C673T
  • T680C
  • G681A
  • C683T
  • A684G
  • T686C
  • A688C
  • G693A
  • A696T
  • T698C
  • G699A
  • A700G
  • C704A
  • G708A
  • A709T
  • T711C

S

  • T1C
  • C2T
  • T3C
  • C4A
  • A6G
  • C14A
  • G20T
  • G54A
  • G67A
  • C82T
  • G123A
  • G134A
  • G136A
  • C142T
  • C154T
  • T155C
  • C166T
  • G169A
Deletions
N/A
Insertions

L

ins_6460:AAA

S

ins_1580:C

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:G192A
  • GPC:D197N
  • GPC:S198G
  • GPC:H199P
  • GPC:A201T
  • GPC:T202S
  • GPC:E203R
  • GPC:H204Q
  • GPC:E206M
  • GPC:S207P
  • GPC:L208S
  • GPC:G215N
  • GPC:L216P
  • GPC:M217T
  • GPC:T221A
  • GPC:H225L
  • GPC:A229V
  • GPC:T230P

NP

  • NP:G23E
  • NP:V27I
  • NP:Y34H
  • NP:R45K
  • NP:S109N
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:A271S
  • NP:S301G
  • NP:N419S
  • NP:V436I
  • NP:T439K
  • NP:N442I
  • NP:Q444K

RdRp

  • RdRp:S6N
  • RdRp:I13V
  • RdRp:A14T
  • RdRp:N52S
  • RdRp:Y60N
  • RdRp:N206Y
  • RdRp:I223M
  • RdRp:S409G
  • RdRp:N421S
  • RdRp:C422Y
  • RdRp:V444I
  • RdRp:S498N
  • RdRp:S504C
  • RdRp:I505T
  • RdRp:V515I
  • RdRp:C648S
  • RdRp:K673R
  • RdRp:R764K
Deletions
N/A
Insertions

RdRp

ins_RdRp:2129:E

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