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PPD_002CCLP.1

Display Name: Ireland/PPD_002CCLP.1/2025-04-16
M. Carr, C. Bennett, W. Banka, L. Fahey, A. Rice, J. Dean, D. Hare & C. F. De Gascun

Submission details

Submission ID
OZ262351.1
Submitting group
Date submitted
2025-07-03 11:00:48 UTC
Date released
2025-07-03 11:09:39 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-03 11:01insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
UCD National Virus Reference Laboratory, Dublin, Co. Dublin

INSDC

BioProject accession
BioSample accession
INSDC accession
NCBI release date
2025-06-03
NCBI update date
2025-06-04

Alignment and QC metrics

Completeness
99.88%
Length
15205
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
4
Total SNPs
131
Total unknown nucs
0

Sample details

Earliest release date
2025-06-03
Collection country
Ireland
Collection date
2025-04-16
Collection date (lower bound)
2025-04-16
Collection date (upper bound)
2025-04-16

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
B.D.E.1

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • C43T
  • G513T
  • G579A
  • C598T
  • C998A
  • A1007C
  • G1385A
  • T1633A
  • G1732A
  • T1846C
  • C2074T
  • A2089G
  • C2198T
  • A2500G
  • C2554T
  • G2667A
  • C2691T
  • G3036C
    • Deletions
    973, 4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:T139A
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:I268T
  • G:L270F
  • G:S275P
  • G:S283F
  • G:Y285H

    • L

  • L:S8G
  • L:K570R
  • L:R1759K
  • L:A1927V
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:F39L
  • M2-2:C49F
  • M2-2:D67G

    • N

  • N:V97I

    • P

  • P:T66A
    • Deletions
    None
    Insertions
    None

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