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PPD_002DQRZ.1

Display Name: USA/PPD_002DQRZ.1/2025-06-03
T. Iverson, K. Oakeson & J. Hergert

Submission details

Submission ID
PV822320.1
Submitting group
Date submitted
2025-07-03 11:01:26 UTC
Date released
2025-07-03 13:13:22 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-03 11:01insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Utah Public Health Laboratory, Utah Public Health Laboratory Infectious Disease Submission Group

Clade & Lineage

Clade
IIb
Lineage
F.2
Outbreak
hMPXV-1

Alignment and QC metrics

Completeness
56.92%
Length
184173
Total ambiguous nucs
12
Total deleted nucs
10
Total frame shifts
0
Total inserted nucs
0
Total SNPs
49
Total stop codons
0
Total unknown nucs
71917

Sample details

Earliest release date
2025-06-25
Collection country
USA
Collection date
2025-06-03
Collection date (lower bound)
2025-06-03
Collection date (upper bound)
2025-06-03
Isolate name
MPXV/Human/USA/UT-UPHL-7646b/2025

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2025-06-25
NCBI update date
2025-06-25

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C7771T
  • G15428A
  • T28175C
  • G30367A
  • G31053A
  • G38360A
  • C38662T
  • C39119T
  • C39139T
  • G52885A
  • G53326A
  • G54117A
  • G54635A
  • G64297A
  • G69840A
  • C72362T
  • C73066T
  • G73239A
    • Deletions
    133177-133186
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_063383.1 reference

    Substitutions

    OPG047

  • OPG047:R48C

    • OPG056

  • OPG056:E125K

    • OPG057

  • OPG057:E353K

    • OPG071

  • OPG071:L108F

    • OPG072

  • OPG072:D56N

    • OPG092

  • OPG092:D196N

    • OPG093

  • OPG093:S30L
  • OPG093:D88N

    • OPG094

  • OPG094:M142I

    • OPG098

  • OPG098:E162K

    • OPG117

  • OPG117:E361Q

    • OPG120

  • OPG120:D151N

    • OPG132

  • OPG132:E151D

    • OPG145

  • OPG145:E62K
  • OPG145:R243Q
  • OPG145:E435K

    • OPG150

  • OPG150:S307L

    • OPG188

  • OPG188:E12K

    • OPG210

  • OPG210:P722S
  • OPG210:M1741I
    • Deletions
    None
    Insertions
    None

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