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PPD_002H6A5.1

Display Name: Netherlands/PPD_002H6A5.1/2017-12-15
G.-L. Lin, S. B. Drysdale, M. D. Snape, D. O'Connor, A. Brown, G. MacIntyre-Cockett, E. Mellado-Gomez, M. de Cesare, D. Bonsall, M. A. Ansari, D. Oner, J. Aerssens, C. Butler, L. Bont, P. Openshaw, F. Martinon-Torres, H. Nair, R. Bowden, T. Golubchik & A. J. Pollard

Submission details

Submission ID
MZ516108.1
Submitting group
Date submitted
2025-07-16 15:13:13 UTC
Date released
2025-07-16 15:25:12 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-16 15:13insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Oxford Vaccine Group, Department of Paediatrics, University of Oxford

INSDC

BioProject accession
INSDC accession
NCBI release date
2021-08-18
NCBI update date
2021-08-18

Alignment and QC metrics

Completeness
100.00%
Length
15274
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
50
Total SNPs
111
Total unknown nucs
0

Sample details

Earliest release date
2021-08-18
Collection country
Netherlands
Collection date
2017-12-15
Collection date (lower bound)
2017-12-15
Collection date (upper bound)
2017-12-15
Isolate name
UU02-0017-V01

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
A.D.2.2

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T66A
  • A67G
  • A661G
  • C998T
  • G1050A
  • A1272G
  • T1359C
  • C1788T
  • C1806T
  • G1833A
  • T2165C
  • A2392G
  • T2481C
  • A2770G
  • G2782A
  • C3117T
  • T3163C
  • T3178C
    • Deletions
    5646
    Insertions
    ins_15225:GTTTTTGACACTTTTTTTCTC, ins_3183:G, ins_547:AA, ins_0:CGAAAAAATGCGTACAACAAACTTGC

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:F114S
  • F:T555A

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:K223R
  • G:G224E
  • G:I265L
  • G:P274L
  • G:D284G
  • G:L314P

    • L

  • L:P171L
  • L:R256K
  • L:H568Y
  • L:I1015V
  • L:S1193G
  • L:L1438Q
  • L:G1550S
  • L:N1723S
  • L:Q1977H

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y26C

    • N

  • N:V352A

    • P

  • P:L55P
    • Deletions
    None
    Insertions
    None

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