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PPD_002H86B.1

Display Name: India/PPD_002H86B.1/2015
S. Sarkar, R. K. Ratho & M. Singh

Submission details

Submission ID
MZ954947.1
Submitting group
Date submitted
2025-07-16 15:13:13 UTC
Date released
2025-07-16 15:25:43 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-16 15:13insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Post Graduate Institute of Medical Education & Research, Department of Virology

Alignment and QC metrics

Completeness
2.15%
Length
327
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
16
Total unknown nucs
0

Sample details

Earliest release date
2022-02-28
Collection country
India
Collection date
2015
Collection date (lower bound)
2015-01-01
Collection date (upper bound)
2015-12-31
Isolate name
IND/RM133/2015

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2022-02-28
NCBI update date
2022-02-28

Lineage

Lineage
A.D.5

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C5295T
  • G5322A
  • T5325C
  • A5337G
  • C5356T
  • C5374A
  • G5379T
  • C5393A
  • C5418T
  • A5435G
  • A5444C
  • T5491C
  • A5502G
  • T5559C
  • T5561C
  • T5580C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    G

  • G:P215L
  • G:G224E
  • G:V225A
  • G:K229R
  • G:S243I
  • G:L248I
  • G:P256L
  • G:K262E
  • G:I265L
  • G:D284G
  • G:V303A
  • G:Y304H
  • G:L310P
    • Deletions
    None
    Insertions
    None

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