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PPD_002H8A3.1

Display Name: USA/PPD_002H8A3.1/2025-04-16
H. D. Kunerth, M. Plumb, S. Namugenyi, D. Evans, L. Bohnkers-Voels & A. Strain

Submission details

Submission ID
PV640360.1
Submitting group
Date submitted
2025-07-03 11:01:41 UTC
Date released
2025-07-03 11:17:43 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-03 11:01insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

BioProject accession
BioSample accession
INSDC accession
Raw reads accession
NCBI release date
2025-05-21
NCBI update date
2025-05-21

Alignment and QC metrics

Completeness
95.45%
Length
15140
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
4
Total SNPs
142
Total unknown nucs
609

Sample details

Earliest release date
2025-05-21
Collection subdivision level 1
Minnesota
Collection country
USA
Collection date
2025-04-16
Collection date (lower bound)
2025-04-16
Collection date (upper bound)
2025-04-16
Isolate name
MN-MDH-RSVB-03106

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
B.D.E.1.5

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • A134G
  • A314T
  • G649A
  • A664G
  • C688T
  • G781A
  • T960C
  • C998A
  • T1033C
  • G1385A
  • G1732A
  • T1846C
  • C2198T
  • T2406C
  • T2457C
  • C2554T
  • C2691T
  • A2892T
    • Deletions
    973, 4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:R42K
  • F:L125P
  • F:I129T
  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:I87T
  • G:L91F
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:T216I
  • G:L217P
  • G:P221L
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:G146D
  • L:C195R
  • L:K570R
  • L:I1224V
  • L:K1637R
  • L:R1759K
  • L:I1773V
  • L:V1965I
  • L:T1987I
  • L:V2077I
  • L:L2162F

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I

    • NS2

  • NS2:I27M
    • Deletions
    None
    Insertions
    None

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