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PPD_002HALE.1
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Display Name: China/PPD_002HALE.1
Y. Sun,
S. Lei,
Y. Wang,
H. Qiang,
Y. Yin,
Z. Jiang,
M. Zhu,
X. Chen,
H. Ye,
Z. Zheng &
N. Xia
Submission details
Submission ID
OM062760.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-04 13:20:09 UTC
Date released
2025-07-04 13:34:01 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-07-04 13:20
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Xiamen University, School of Public Health
Alignment and QC metrics
Completeness
5.75%
Length
876
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
24
Total unknown nucs
0
Sample details
Earliest release date
2022-02-13
Collection subdivision level 1
Xiamen
Collection country
China
Collection date (upper bound)
2022-02-13
Host
Host name - scientific
Homo sapiens
Host taxon ID
9606
INSDC
INSDC accession
OM062760.1
NCBI release date
2022-02-13
NCBI update date
2022-02-13
Lineage
Lineage
A.D.5
Nucleotide mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
C
4767
T
C
4863
T
C
4919
T
T
4936
C
C
4952
T
G
5020
A
T
5052
A
T
5233
C
C
5268
A
G
5322
A
C
5364
T
C
5374
A
G
5379
T
C
5393
A
A
5435
G
A
5444
C
T
5491
C
A
5502
G
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
G
G:
A
39
V
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
I
134
K
G:
P
206
Q
G:
G
224
E
G:
T
238
I
G:
S
243
I
G:
L
248
I
G:
K
262
E
G:
I
265
L
G:
D
284
G
G:
V
303
A
G:
Y
304
H
G:
L
310
P
G:
T
320
A
Deletions
None
Insertions
None
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