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PPD_002HALE.1

Display Name: China/PPD_002HALE.1
Y. Sun, S. Lei, Y. Wang, H. Qiang, Y. Yin, Z. Jiang, M. Zhu, X. Chen, H. Ye, Z. Zheng & N. Xia

Submission details

Submission ID
OM062760.1
Submitting group
Date submitted
2025-07-04 13:20:09 UTC
Date released
2025-07-04 13:34:01 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-04 13:20insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Xiamen University, School of Public Health

Alignment and QC metrics

Completeness
5.75%
Length
876
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
24
Total unknown nucs
0

Sample details

Earliest release date
2022-02-13
Collection subdivision level 1
Xiamen
Collection country
China
Collection date (upper bound)
2022-02-13

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2022-02-13
NCBI update date
2022-02-13

Lineage

Lineage
A.D.5

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C4767T
  • C4863T
  • C4919T
  • T4936C
  • C4952T
  • G5020A
  • T5052A
  • T5233C
  • C5268A
  • G5322A
  • C5364T
  • C5374A
  • G5379T
  • C5393A
  • A5435G
  • A5444C
  • T5491C
  • A5502G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    G

  • G:A39V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:P206Q
  • G:G224E
  • G:T238I
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:V303A
  • G:Y304H
  • G:L310P
  • G:T320A
    • Deletions
    None
    Insertions
    None

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