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PPD_002HB1J.1

Display Name: China/PPD_002HB1J.1/2018-12
Q. Luo, M. Li & F. Huang

Submission details

Submission ID
MZ961833.1
Submitting group
Date submitted
2025-07-16 15:13:13 UTC
Date released
2025-07-16 15:25:43 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-16 15:13insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Immunological Prevention, Beijing Center for Disease Prevention and Control

Alignment and QC metrics

Completeness
2.34%
Length
357
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
16
Total unknown nucs
0

Sample details

Earliest release date
2022-03-05
Collection country
China
Collection date
2018-12
Collection date (lower bound)
2018-12-01
Collection date (upper bound)
2018-12-31
Isolate name
2018-R6233

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2022-03-05
NCBI update date
2022-03-05

Lineage

Lineage
A.D.3

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • A5269T
  • G5322A
  • T5332C
  • T5368C
  • C5374A
  • G5379T
  • C5425A
  • A5435G
  • A5444C
  • A5448T
  • C5472T
  • A5502G
  • C5544T
  • C5572T
  • C5595T
  • A5599C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    G

  • G:G224E
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:P274L
  • G:D284G
  • G:P298L
  • G:S315F
    • Deletions
    None
    Insertions
    None

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