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PPD_002KAFM.1

DENV-1/Gabon/SYMAV-H0408/2021-03-10
Y. Ushijima, H. Abe, M. J. V. M. Mbadinga, G. Nguema-Ondo, R. Bikangui, S. T. Agnandji, B. Lell & J. Yasuda

Nagasaki University, Department of Emerging Infectious Diseases; 1-12-4 Sakamoto, Nagasaki, Nagasaki 851-8523

Sample details

Collection date
2021-03-10
Sampling location
Gabon (Lambarene)
Isolate name
SYMAV-H0408

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:28insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2022-08-26
NCBI update date
2022-08-26

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
LC707378.1
Submitting group
Date submitted
2026-03-11 17:26:39 UTC
Date released
2026-03-11 19:00:51 UTC
Earliest release date
2022-08-26

Lineage & Serotype

Lineage
1VII_B
Serotype
DENV-1

Alignment and QC

Length
1485 (13.8%)
# of SNPs
132

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

  • G940A
  • G970T
  • T988A
  • G1009A
  • T1021C
  • T1030C
  • A1039G
  • A1042G
  • G1043A
  • C1045T
  • C1055T
  • C1069T
  • A1087G
  • C1100T
  • C1141T
  • G1150A
  • G1177A
  • C1178T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

E

  • E:D37N
  • E:T88A
  • E:I114L
  • E:T161I
  • E:K203E
  • E:F279L
  • E:I293T
  • E:S339I
  • E:T346I
  • E:A369T
  • E:A386T
  • E:I436V
  • E:I439V
Deletions
N/A
Insertions
N/A

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