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PPD_002KAGK.1
Download
Download FASTA
Download metadata TSV
DENV-1/Gabon/SYMAV-H0983/2021-06-30
Y. Ushijima,
H. Abe,
M. J. V. M. Mbadinga,
G. Nguema-Ondo,
R. Bikangui,
S. T. Agnandji,
B. Lell &
J. Yasuda
Nagasaki University, Department of Emerging Infectious Diseases; 1-12-4 Sakamoto, Nagasaki, Nagasaki 851-8523
Sample details
Collection date
2021-06-30
Sampling location
Gabon (Lambarene)
Isolate name
SYMAV-H0983
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-11 17:28
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession
LC707382.1
NCBI release date
2022-08-26
NCBI update date
2022-08-26
Host
Host
9606
Host name - scientific
Homo sapiens
Submission details
Submission ID
LC707382.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-11 17:26:39 UTC
Date released
2026-03-11 19:00:51 UTC
Earliest release date
2022-08-26
Lineage & Serotype
Lineage
1VII_B
Serotype
DENV-1
Alignment and QC
Length
10670 (99.4%)
# of SNPs
839
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
T
171
G
T
208
C
T
244
C
T
274
C
G
302
A
C
304
T
C
346
T
G
349
A
A
351
G
A
355
G
A
363
G
A
372
G
C
412
T
G
436
T
C
439
T
T
442
C
C
443
T
C
451
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
2K
2K:
M
17
V
C
C:
V
26
G
C:
G
70
S
C:
K
86
R
C:
N
90
S
C:
N
93
S
E
E:
D
37
N
E:
T
88
A
E:
I
114
L
E:
T
161
I
E:
K
203
E
E:
F
279
L
E:
I
293
T
E:
S
339
I
E:
T
346
I
E:
A
369
T
E:
A
386
T
E:
I
436
V
E:
I
439
V
NS1
NS1:
I
66
V
NS1:
S
94
N
NS1:
I
96
V
NS1:
V
128
I
NS1:
N
139
D
NS1:
N
146
D
NS1:
V
178
M
NS1:
I
251
T
NS1:
H
290
R
NS1:
T
307
I
NS1:
K
347
R
NS2A
NS2A:
I
15
V
NS2A:
T
44
I
NS2A:
K
67
R
NS2A:
R
82
K
NS2A:
F
93
L
NS2A:
A
147
T
NS2A:
F
159
L
NS2A:
H
162
D
NS2A:
I
171
V
NS2A:
I
174
M
NS2A:
L
199
F
NS2A:
K
213
R
NS2B
NS2B:
A
34
S
NS2B:
I
106
V
NS2B:
Y
110
F
NS3
NS3:
V
13
A
NS3:
E
43
D
NS3:
S
88
L
NS3:
A
91
T
NS3:
K
107
R
NS3:
A
112
T
NS3:
R
185
K
NS3:
V
221
I
NS3:
M
239
I
NS3:
S
250
T
NS3:
K
255
R
NS3:
V
384
I
NS3:
N
401
S
NS3:
I
474
V
NS4A
NS4A:
Q
19
L
NS4A:
R
20
K
NS4A:
R
76
K
NS4A:
I
89
M
NS4A:
A
93
I
NS4B
NS4B:
A
18
V
NS4B:
N
22
D
NS4B:
H
24
Q
NS4B:
A
27
T
NS4B:
H
34
R
NS4B:
A
163
T
NS5
NS5:
I
34
T
NS5:
Y
127
H
NS5:
T
135
I
NS5:
K
364
N
NS5:
R
378
K
NS5:
H
435
R
NS5:
T
448
R
NS5:
E
458
K
NS5:
K
459
R
NS5:
N
585
S
NS5:
A
616
V
NS5:
S
629
L
NS5:
T
635
N
NS5:
V
642
A
NS5:
K
647
E
NS5:
T
651
V
NS5:
I
669
T
NS5:
V
782
I
NS5:
F
881
Y
prM
prM:
T
59
A
prM:
E
72
D
prM:
D
89
E
prM:
T
125
I
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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