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PPD_002KAJE.1

DENV-2/Japan/PPD_002KAJE.1/2023-04
W. Okada, F. Kasuya, S. Harada, R. Kumagai, M. Hasegawa, H. Miyake, M. Nagashima, K. Sadamasu & A. Amano

Department of Microbiology; 3-24-1, Hyakunin-cho, Shinjuku-ku, Tokyo 169-0073

Sample details

Collection date
2023-04
Sampling location
Japan (Tokyo)
Isolate name
D2/Hu/TKYDP23002

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:28insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2023-05-31
NCBI update date
2023-05-31

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
LC769364.1
Submitting group
Date submitted
2026-03-11 17:26:39 UTC
Date released
2026-03-11 19:00:51 UTC
Earliest release date
2023-05-31

Lineage & Serotype

Lineage
2II_F.1.1.3
Serotype
DENV-2

Alignment and QC

Length
1485 (13.8%)
# of SNPs
102

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • C945T
  • G954A
  • T960C
  • C993T
  • A1011G
  • C1047T
  • C1086G
  • G1092T
  • T1095C
  • C1101T
  • C1113T
  • T1116C
  • A1131G
  • C1137T
  • A1148C
  • G1170A
  • G1191A
  • G1203A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

E

  • E:M6I
  • E:Q52H
  • E:E71A
  • E:R120T
  • E:V129I
  • E:H149N
  • E:I164V
  • E:I322V
  • E:I462V
  • E:T478S
Deletions
N/A
Insertions
N/A

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