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PPD_002KBKB.1

DENV-1/Japan/PPD_002KBKB.1/2020-01
W. Okada, F. Kasuya, S. Harada, R. Kumagai, A. Amano, M. Hasegawa, H. Miyake, M. Nagashima & K. Sadamasu

Department of Microbiology; 3-24-1, Hyakunin-cho, Shinjuku-ku, Tokyo 169-0073

Sample details

Collection date
2020-01
Sampling location
Japan (Tokyo)
Isolate name
D1/Hu/TKYDP19108

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:28insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2023-08-04
NCBI update date
2023-08-04

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
LC775716.1
Submitting group
Date submitted
2026-03-11 17:26:39 UTC
Date released
2026-03-11 19:00:51 UTC
Earliest release date
2023-08-04

Lineage & Serotype

Lineage
1IV_B.2
Serotype
DENV-1

Alignment and QC

Length
1485 (13.8%)
# of SNPs
54

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

  • C943T
  • A1006G
  • T1030C
  • T1070C
  • C1084T
  • C1096A
  • C1109T
  • C1144T
  • C1174T
  • A1189G
  • T1210C
  • C1240T
  • T1267C
  • G1279A
  • T1285A
  • T1291C
  • T1337C
  • G1351C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

E

  • E:K203E
  • E:I293T
  • E:M297V
  • E:I378L
Deletions
N/A
Insertions
N/A

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