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PPD_002KBN5.1

DENV-1/Japan/PPD_002KBN5.1/2023-06
W. Okada, F. Kasuya, S. Harada, R. Kumagai, A. Amano, M. Hasegawa, H. Miyake, M. Nagashima & K. Sadamasu

Department of Microbiology; 3-24-1, Hyakunin-cho, Shinjuku-ku, Tokyo 169-0073

Sample details

Collection date
2023-06
Sampling location
Japan (Tokyo)
Isolate name
D1/Hu/TKYDP23008

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:28insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2023-08-04
NCBI update date
2023-08-04

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
LC775719.1
Submitting group
Date submitted
2026-03-11 17:26:39 UTC
Date released
2026-03-11 19:00:51 UTC
Earliest release date
2023-08-04

Lineage & Serotype

Lineage
1I_K.1.1
Serotype
DENV-1

Alignment and QC

Length
1485 (13.8%)
# of SNPs
115

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

  • G940A
  • A952C
  • A957G
  • T988A
  • G991T
  • G997A
  • A1006G
  • C1007T
  • G1012A
  • C1045T
  • C1055T
  • G1081A
  • A1088G
  • C1114T
  • C1144T
  • T1147C
  • G1150A
  • G1177A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

E

  • E:N8S
  • E:N52D
  • E:T88A
  • E:T155S
  • E:S171T
  • E:K203E
  • E:I293T
  • E:V324I
  • E:S339T
  • E:V380I
  • E:I436V
  • E:I461V
  • E:M484L
Deletions
N/A
Insertions
N/A

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