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PPD_002KCYJ.1

DENV-3/Japan/PPD_002KCYJ.1/2022-05
W. Okada, F. Kasuya, S. Harada, R. Kumagai, A. Amano, M. Hasegawa, H. Miyake, M. Nagashima & K. Sadamasu

Department of Microbiology; 3-24-1, Hyakunin-cho, Shinjuku-ku, Tokyo 169-0073

Sample details

Collection date
2022-05
Sampling location
Japan (Tokyo)
Isolate name
D3/Hu/TKYDP22001

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:28insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2023-08-10
NCBI update date
2023-08-10

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
LC776698.1
Submitting group
Date submitted
2026-03-11 17:26:39 UTC
Date released
2026-03-11 19:00:51 UTC
Earliest release date
2023-08-10

Lineage & Serotype

Lineage
3III_B.1
Serotype
DENV-3

Alignment and QC

Length
1479 (13.8%)
# of SNPs
65
# of ambiguous bases
1

Nucleotide mutations

Mutations called relative to the NC_001475.2 reference

Substitutions

  • A952G
  • G976T
  • A979G
  • C1009A
  • T1030C
  • C1135T
  • G1174A
  • C1201T
  • T1234C
  • T1246C
  • A1264G
  • C1304T
  • C1305T
  • A1306G
  • C1348T
  • C1400A
  • A1402G
  • A1423G
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001475.2 reference

Substitutions

E

  • E:P124L
  • E:Q156K
  • E:A219T
  • E:S271T
  • E:I380T
  • E:E404A
  • E:A489V
Deletions
N/A
Insertions
N/A

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