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PPD_002KD0E.1

DENV-3/Japan/PPD_002KD0E.1/2023-07
W. Okada, F. Kasuya, S. Harada, R. Kumagai, A. Amano, M. Hasegawa, H. Miyake, M. Nagashima & K. Sadamasu

Department of Microbiology; 3-24-1, Hyakunin-cho, Shinjuku-ku, Tokyo 169-0073

Sample details

Collection date
2023-07
Sampling location
Japan (Tokyo)
Isolate name
D3/Hu/TKYDP23014

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:28insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2023-08-10
NCBI update date
2023-08-10

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
LC776700.1
Submitting group
Date submitted
2026-03-11 17:26:39 UTC
Date released
2026-03-11 19:00:51 UTC
Earliest release date
2023-08-10

Lineage & Serotype

Lineage
3I_C.2
Serotype
DENV-3

Alignment and QC

Length
1479 (13.8%)
# of SNPs
118

Nucleotide mutations

Mutations called relative to the NC_001475.2 reference

Substitutions

  • A940G
  • G976C
  • T988C
  • G1018T
  • T1060C
  • T1069C
  • C1084T
  • G1105A
  • G1108A
  • G1123A
  • A1126G
  • A1136G
  • T1144C
  • A1153G
  • T1156C
  • T1159C
  • G1175A
  • T1176C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001475.2 reference

Substitutions

E

  • E:I68V
  • E:V81T
  • E:P124S
  • E:Y132H
  • E:T169V
  • E:A219T
  • E:R231K
  • E:N270T
  • E:T301L
  • E:T303A
  • E:N383K
  • E:E404A
  • E:V452I
  • E:A479V
Deletions
N/A
Insertions
N/A

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