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PPD_002KD38.1
Download
Download FASTA
Download metadata TSV
DENV-3/Japan/DV3P1208/2023-12-26
T. Kurosu,
Y. Sakai,
Y. Ami,
M. Shimojima,
T. Yoshikawa,
S. Fukushi,
N. Nagata,
T. Suzuki,
H. Ebihara &
M. Saijo
Department of Virology I; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011
Sample details
Collection date
2023-12-26
Sampling location
Japan
Isolate name
DV3P1208
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-11 17:28
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession
LC793496.1
NCBI release date
2024-12-13
NCBI update date
2024-12-13
Host
Host
9606
Host name - scientific
Homo sapiens
Submission details
Submission ID
LC793496.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-11 17:26:39 UTC
Date released
2026-03-11 19:00:51 UTC
Earliest release date
2024-12-13
Lineage & Serotype
Lineage
3II_A.2
Serotype
DENV-3
Alignment and QC
Length
10707 (99.9%)
# of SNPs
699
# of ambiguous bases
6
Nucleotide mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
C
90
T
G
109
A
G
112
A
A
198
G
C
203
T
G
217
A
G
319
A
G
337
A
C
358
T
C
368
T
C
383
A
C
386
A
A
418
G
G
421
A
G
428
A
A
454
C
T
475
C
T
496
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
2K
2K:
T
20
I
2K:
I
21
V
C
C:
K
35
R
C:
Q
97
K
C:
I
108
M
C:
A
112
T
E
E:
N
37
S
E:
V
81
T
E:
E
154
D
E:
A
160
V
E:
T
169
V
E:
I
172
V
E:
K
202
R
E:
A
219
T
E:
T
301
L
E:
T
303
S
E:
N
383
K
E:
E
404
A
E:
V
452
I
E:
A
479
V
NS1
NS1:
T
93
I
NS1:
L
94
I
NS1:
L
178
S
NS1:
V
188
I
NS1:
L
217
F
NS1:
T
233
S
NS1:
Y
256
H
NS1:
S
290
N
NS1:
S
339
N
NS2A
NS2A:
L
23
M
NS2A:
F
37
L
NS2A:
V
127
I
NS2A:
A
133
T
NS2A:
V
180
L
NS2A:
L
215
P
NS2B
NS2B:
P
57
A
NS3
NS3:
T
112
M
NS3:
T
115
I
NS3:
I
282
V
NS3:
D
324
E
NS3:
A
356
V
NS3:
K
399
R
NS3:
Q
568
E
NS3:
K
589
R
NS4A
NS4A:
D
36
H
NS4A:
A
90
V
NS4A:
E
99
D
NS4B
NS4B:
T
108
I
NS4B:
I
115
V
NS4B:
S
157
P
NS4B:
F
160
Y
NS4B:
K
247
R
NS5
NS5:
V
72
I
NS5:
K
173
R
NS5:
H
200
Y
NS5:
N
288
S
NS5:
A
372
V
NS5:
R
389
K
NS5:
K
422
R
NS5:
I
553
T
NS5:
T
585
K
NS5:
L
603
V
NS5:
T
629
S
NS5:
R
749
K
NS5:
V
788
I
NS5:
E
820
D
NS5:
N
835
D
NS5:
P
864
L
NS5:
N
876
D
prM
prM:
T
5
S
prM:
G
7
D
prM:
H
11
R
prM:
S
15
G
prM:
Q
17
N
prM:
S
28
A
prM:
A
29
S
prM:
V
31
I
prM:
L
44
M
prM:
E
46
D
prM:
M
49
V
prM:
R
55
L
prM:
T
57
A
prM:
T
59
V
prM:
D
62
E
prM:
V
64
I
prM:
A
70
L
prM:
E
72
S
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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