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PPD_002PERN.1

Display Name: Ireland/PPD_002PERN.1/2025-03-31
M. Carr, C. Bennett, W. Banka, L. Fahey, A. Rice, J. Dean, D. Hare & C. F. De Gascun

Submission details

Submission ID
OZ262176.1
Submitting group
Date submitted
2025-07-03 11:01:30 UTC
Date released
2025-07-03 11:22:28 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-03 11:01insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
UCD National Virus Reference Laboratory, Dublin, Co. Dublin

INSDC

BioProject accession
BioSample accession
INSDC accession
NCBI release date
2025-06-03
NCBI update date
2025-06-04

Alignment and QC metrics

Completeness
85.81%
Length
13753
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
2
Total SNPs
182
Total unknown nucs
687

Sample details

Earliest release date
2025-06-03
Collection country
Ireland
Collection date
2025-03-31
Collection date (lower bound)
2025-03-31
Collection date (upper bound)
2025-03-31

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
A.D.3

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T1359C
  • A1361G
  • T1413A
  • T1422C
  • C1788T
  • C1806T
  • G1968A
  • T2165C
  • A2392G
  • C2410T
  • T2416C
  • T2481C
  • C2592T
  • A2695G
  • T3045C
  • C3100A
  • T3109C
  • C3125T
    • Deletions
    None
    Insertions
    ins_3183:G, ins_3154:A

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I
  • F:A23T
  • F:K123R

    • G

  • G:N66T
  • G:S102P
  • G:T113I
  • G:I114T
  • G:L115P
  • G:S117P
  • G:V131D
  • G:I134K
  • G:N178G
  • G:G224E

    • L

  • L:N37D
  • L:Y598H
  • L:L835M
  • L:D969G
  • L:L1438Q
  • L:T1489A
  • L:S1593G
  • L:T1712A
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:K2064R
  • L:T2069A

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:T1M
  • M2-2:Y26C
  • M2-2:S46N
  • M2-2:D64G
  • M2-2:T79A

    • N

  • N:K84R
  • N:V352A

    • P

  • P:L55P
  • P:T92M
    • Deletions
    None
    Insertions
    None

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