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PPD_002PGX8.1

Display Name: Ireland/PPD_002PGX8.1/2025-04-16
M. Carr, C. Bennett, W. Banka, L. Fahey, A. Rice, J. Dean, D. Hare & C. F. De Gascun

Submission details

Submission ID
OZ262291.1
Submitting group
Date submitted
2025-07-03 11:01:30 UTC
Date released
2025-07-03 11:22:28 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-03 11:01insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
UCD National Virus Reference Laboratory, Dublin, Co. Dublin

INSDC

BioProject accession
BioSample accession
INSDC accession
NCBI release date
2025-06-03
NCBI update date
2025-06-04

Alignment and QC metrics

Completeness
99.83%
Length
15198
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
223
Total unknown nucs
0

Sample details

Earliest release date
2025-06-03
Collection country
Ireland
Collection date
2025-04-16
Collection date (lower bound)
2025-04-16
Collection date (upper bound)
2025-04-16

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
A.D.1

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T66A
  • A67G
  • C90T
  • C183T
  • G198A
  • A342T
  • A399G
  • A502G
  • G520A
  • G551A
  • G555A
  • T659C
  • G664A
  • T697C
  • A996G
  • G1000A
  • C1012T
  • T1035A
    • Deletions
    4592
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:A518V

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:S117L
  • G:I134K
  • G:L142S
  • G:G224E
  • G:V225A
  • G:S243I
  • G:K262E
  • G:I265L
  • G:P276L
  • G:Y280H
  • G:D284G
  • G:E295V
  • G:Y304H
  • G:E308K
  • G:L314P
  • G:T320A

    • L

  • L:I66M
  • L:N143D
  • L:P171L
  • L:T179S
  • L:T184A
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:S1789F
  • L:Y2163N

    • M

  • M:K25R
  • M:M43I

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N

    • N

  • N:V352A

    • NS1

  • NS1:E91D

    • P

  • P:L55P

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None

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