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PPD_002SJE1.1

Display Name: Ireland/PPD_002SJE1.1/2025-03-31
M. Carr, C. Bennett, W. Banka, L. Fahey, A. Rice, J. Dean, D. Hare & C. F. De Gascun

Sample details

Collection date
2025-03-31
Country
Ireland

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:55insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.5.2

Authors

Author affiliations
UCD National Virus Reference Laboratory, Dublin, Co. Dublin

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-06-03
NCBI update date
2025-06-04

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15196
# of SNPs
231
# of inserted bases
2
# of deleted bases
4
# of ambiguous bases
0
# of unknown bases
179
# of frame shifts
0
Completeness
98.65%

Submission details

Submission ID
OZ262254.1
Submitting group
Date submitted
2025-09-17 10:54:52 UTC
Date released
2025-09-17 11:19:34 UTC
Earliest release date
2025-06-03

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T66A
  • A67G
  • C90T
  • A135T
  • C183T
  • T246C
  • G555A
  • C643T
  • T697C
  • T922C
  • G934A
  • A940C
  • T1004C
  • A1009G
  • A1021G
  • T1028C
  • G1050A
  • A1051C
    • Deletions
    4592, 7516-7518
    Insertions
    ins_4174:A, ins_4533:A

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:A103T
  • F:T122A

    • G

  • G:A57V
  • G:P71L
  • G:Q82H
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:Q140R
  • G:P206Q
  • G:K209R
  • G:G224E
  • G:T231I
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L
  • G:S267L
  • G:S283P
  • G:D284G

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:K1727R
  • L:G1731D
  • L:L1746S
  • L:T1942I
  • L:V1943D

    • M

  • M:M73L

    • M2-1

  • M2-1:S170N
  • M2-1:S176P

    • M2-2

  • M2-2:S46N

    • N

  • N:I104V
  • N:V352A

    • P

  • P:L55P
  • P:T69I
  • P:E239D
    • Deletions
    None
    Insertions
    None

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