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PPD_002SJNJ.1

Display Name: Ireland/PPD_002SJNJ.1/2025-04-03
M. Carr, C. Bennett, W. Banka, L. Fahey, A. Rice, J. Dean, D. Hare & C. F. De Gascun

Sample details

Collection date
2025-04-03
Country
Ireland

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:55insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.3

Authors

Author affiliations
UCD National Virus Reference Laboratory, Dublin, Co. Dublin

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-06-03
NCBI update date
2025-06-04

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15230
# of SNPs
218
# of inserted bases
7
# of deleted bases
2
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
Completeness
100.00%

Submission details

Submission ID
OZ262264.1
Submitting group
Date submitted
2025-09-17 10:54:52 UTC
Date released
2025-09-17 11:19:34 UTC
Earliest release date
2025-06-03

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T59C
  • T66A
  • A67G
  • G74A
  • C90T
  • C183T
  • T231C
  • G587T
  • T619C
  • G637A
  • G986A
  • C1012T
  • G1034A
  • G1050A
  • G1077A
  • A1080G
  • T1359C
  • T1413A
    • Deletions
    4592, 15115
    Insertions
    ins_3154:A, ins_15053:CAAAAA

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I
  • F:V56I

    • G

  • G:H67N
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G106R
  • G:T113I
  • G:V131D
  • G:I134K
  • G:R151Q
  • G:N178G
  • G:K221R
  • G:G224E
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:S267P

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:D1163N
  • L:L1438Q
  • L:D1644E
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:R2117K

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N
  • M2-2:T79A

    • N

  • N:V352A

    • NS1

  • NS1:G2D

    • P

  • P:L55P
  • P:T92M
    • Deletions
    None
    Insertions
    None

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