This is the main branch

PPD_002SLFX.1

Display Name: Slovakia/PPD_002SLFX.1/2025-04-01
T. Sladecek

Sample details

Collection date
2025-04-01
Country
Slovakia
Isolate name
RNA

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:55insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.1.6

Authors

Author affiliations
Science Park of Comenius University of Bratislava, Ilkovicova 8, 841 04 Bratislava

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-06-21
NCBI update date
2025-06-25
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15223
# of SNPs
231
# of inserted bases
0
# of deleted bases
2
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
Completeness
100.00%

Submission details

Submission ID
OZ274165.1
Submitting group
Date submitted
2025-09-17 10:54:52 UTC
Date released
2025-09-17 11:19:34 UTC
Earliest release date
2025-06-21

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T66A
  • C90T
  • C183T
  • G198A
  • A303T
  • C360T
  • A399G
  • T497C
  • G551A
  • G555A
  • C626T
  • G664A
  • T697C
  • G747A
  • G1000A
  • C1012T
  • T1035A
  • C1046T
    • Deletions
    4175, 4592
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G106E
  • G:P120L
  • G:S121I
  • G:I134K
  • G:L142S
  • G:P143S
  • G:T207A
  • G:P217S
  • G:T219N
  • G:G224E
  • G:N242T
  • G:S243I
  • G:K262E
  • G:I265L
  • G:D284G

    • L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:M1225I
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:H1690Y
  • L:H1707Q
  • L:N1719Y
  • L:N1723S
  • L:N1724D
  • L:E1725G
  • L:G1731D
  • L:Y2163N

    • M

  • M:M43I

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N

    • N

  • N:V352A

    • NS2

  • NS2:P10S
  • NS2:R50K

    • P

  • P:V43I
  • P:L55P

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue