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PPD_002TSR2.1

DENV-4/Laos/2019-15690/2019-11-25
E. Calvez, V. Pommelet, S. Somlor, J. Pompon, S. Viengphouthong, P. Bounmany, T. A. Chindavong, T. Xaybounsou, P. Prasayasith, S. Keosenhom, P. T. Brey, O. Telle, M. Choisy, S. Marcombe & M. Grandadam

Institut Pasteur du Laos, Arbovirus & Emerging viral diseases laboratory

Sample details

Collection date
2019-11-25
Sampling location
Laos (Vientiane)
Isolate name
2019-15690

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:30insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2020-09-22
NCBI update date
2020-09-22

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
MT122896.1
Submitting group
Date submitted
2026-03-11 17:28:14 UTC
Date released
2026-03-11 19:28:13 UTC
Earliest release date
2020-09-22

Lineage & Serotype

Lineage
4I_A.3.1
Serotype
DENV-4

Alignment and QC

Length
1485 (13.9%)
# of SNPs
126

Nucleotide mutations

Mutations called relative to the NC_002640.1 reference

Substitutions

  • A959G
  • C968T
  • G974A
  • C1004T
  • C1028T
  • C1031T
  • T1059C
  • T1064C
  • C1075T
  • T1076C
  • T1100C
  • G1103A
  • C1127T
  • A1130C
  • T1145C
  • A1151G
  • T1181C
  • G1184C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_002640.1 reference

Substitutions

E

  • E:T46I
  • E:V96M
  • E:M163T
  • E:K203T
  • E:S227L
  • E:Y233H
  • E:A329T
  • E:L357F
  • E:N384E
  • E:F429L
  • E:I455V
  • E:F461L
  • E:T478S
  • E:Q494H
Deletions
N/A
Insertions
N/A

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