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PPD_002TYGF.1

DENV-1/Indonesia/JBB-140/2019-12
A. Aryati, B. J. Wrahatnala, B. Yohan, M. Fanny, F. K. N. Hakim, E. P. Sunari, N. Zuroidah, P. Wardhani, M. S. Santoso, D. Husada, A. Rohman, S. N. Tarmizi, J. T. O. Sievers, R. T. Sasmono, M. Tanzilia, I. E. Sunari, F. K. Hakim & J. T. Sievers

Eijkman Institute for Molecular Biology, Dengue Research Unit

Sample details

Collection date
2019-12
Sampling location
Indonesia (Jember)
Isolate name
JBB-140

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:30insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2020-08-28
NCBI update date
2020-08-28

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
MT377728.1
Submitting group
Date submitted
2026-03-11 17:28:14 UTC
Date released
2026-03-11 19:29:14 UTC
Earliest release date
2020-08-28

Lineage & Serotype

Lineage
1I_K.2
Serotype
DENV-1

Alignment and QC

Length
1485 (13.8%)
# of SNPs
113

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

  • G940A
  • C955T
  • A957G
  • A961G
  • T988A
  • G991T
  • G997A
  • A1006G
  • C1007T
  • G1012A
  • C1055T
  • C1069T
  • G1081A
  • T1147C
  • G1150A
  • G1177A
  • G1192A
  • A1196G
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

E

  • E:N8S
  • E:T88A
  • E:T155S
  • E:S171T
  • E:K203E
  • E:I293T
  • E:V324I
  • E:S339T
  • E:V380I
  • E:I436V
  • E:I461V
  • E:M484L
Deletions
N/A
Insertions
N/A

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