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PPD_002TYHC.1

DENV-2/Indonesia/JBB-145/2020-01
A. Aryati, B. J. Wrahatnala, B. Yohan, M. Fanny, F. K. N. Hakim, E. P. Sunari, N. Zuroidah, P. Wardhani, M. S. Santoso, D. Husada, A. Rohman, S. N. Tarmizi, J. T. O. Sievers, R. T. Sasmono, M. Tanzilia, I. E. Sunari, F. K. Hakim & J. T. Sievers

Eijkman Institute for Molecular Biology, Dengue Research Unit

Sample details

Collection date
2020-01
Sampling location
Indonesia (Jember)
Isolate name
JBB-145

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:30insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2020-08-28
NCBI update date
2020-08-28

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
MT377729.1
Submitting group
Date submitted
2026-03-11 17:28:14 UTC
Date released
2026-03-11 19:29:14 UTC
Earliest release date
2020-08-28

Lineage & Serotype

Lineage
2II_D.2
Serotype
DENV-2

Alignment and QC

Length
1485 (13.8%)
# of SNPs
100

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • C945T
  • G954A
  • T981A
  • A1011G
  • C1023T
  • A1041G
  • C1047T
  • G1092C
  • C1101T
  • C1113T
  • A1131G
  • A1148C
  • G1170A
  • C1176T
  • G1191A
  • G1203A
  • T1251C
  • A1254G
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

E

  • E:M6I
  • E:Q52H
  • E:E71A
  • E:R120T
  • E:V129I
  • E:H149N
  • E:I164V
  • E:N390S
  • E:I462V
  • E:T478S
  • E:I484V
Deletions
N/A
Insertions
N/A

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