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PPD_002U53Y.1

Display Name: France/PPD_002U53Y.1/2023-12-01
S. Fourati & M.-A. Rameix Welti

Submission details

Submission ID
PQ762846.1
Submitting group
Date submitted
2025-07-16 15:14:51 UTC
Date released
2025-07-16 15:35:52 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-16 15:15insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Hospital Henri Mondor - APHP, Department of Virology

Alignment and QC metrics

Completeness
97.59%
Length
15172
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
2
Total SNPs
204
Total unknown nucs
312

Sample details

Earliest release date
2024-12-18
Collection country
France
Collection date
2023-12-01
Collection date (lower bound)
2023-12-01
Collection date (upper bound)
2023-12-01
Isolate name
026-0009

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2024-12-18
NCBI update date
2024-12-18

Lineage

Lineage
A.D.3

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T59C
  • T66A
  • A67G
  • C90T
  • C183T
  • T270C
  • T372C
  • C531A
  • G587T
  • C1012T
  • G1034A
  • G1050A
  • G1077A
  • A1197T
  • T1359C
  • T1413A
  • T1422C
  • G1428T
    • Deletions
    None
    Insertions
    ins_3148:N, ins_15115:T

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T113I
  • G:V131D
  • G:I134K
  • G:T137I
  • G:N178G
  • G:T210A
  • G:G224E
  • G:S243I
  • G:H258Q
  • G:Q261R
  • G:K262E
  • G:T264I
  • G:I265L
  • G:H266L
  • G:D284G
  • G:Y304H

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D

    • M

  • M:I159T
  • M:T245K

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N
  • M2-2:T79A

    • N

  • N:V352A

    • P

  • P:L55P
  • P:T92M

    • SH

  • SH:V49A
    • Deletions
    None
    Insertions
    None

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